Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 553 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 546 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G10450 282 / 2e-91 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT5G09640 284 / 3e-91 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT2G22970 265 / 3e-84 SCPL11 serine carboxypeptidase-like 11 (.1.2.3) AT1G33540 248 / 1e-77 SCPL18 serine carboxypeptidase-like 18 (.1) AT5G23210 239 / 2e-73 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 230 / 3e-70 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30810 224 / 6e-68 SCPL29 serine carboxypeptidase-like 29 (.1) AT4G15100 224 / 7e-68 SCPL30 serine carboxypeptidase-like 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026830 [exp] 915 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 786 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 550 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 550 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 543 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 519 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 513 / 3e-175 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 290 / 2e-93 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 283 / 2e-84 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054300 [exp] 639 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.014G177500 [exp] 576 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291300 [exp] 298 / 1e-96 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 293 / 1e-94 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 292 / 4e-94 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.013G124900 [exp] 284 / 4e-91 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291700 [exp] 270 / 3e-85 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 263 / 1e-83 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 246 / 1e-76 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.005G091700 [exp] 243 / 5e-75 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10020207 pacid=23141982 polypeptide=Lus10020207 locus=Lus10020207.g ID=Lus10020207.BGIv1.0 annot-version=v1.0 ATGTTTTACTACTTCATAGAGTCAGAGAGAAACTCCAAGGCGGATCCAGTTGTGTTGTGGCTTAACGGCGGACCTGGCTGCTCCAGTTTTGATGGCTTTG TTTATGAACATGGGCCATTCAGCTTTGAAAAAGGGAAGAGCAGAGCAAGTCTGCCAAGGTTGCATCTGAATCCATTCAGCTGGTCCAAGGTGTCCAACAT TATCTACTTGGACTCGCCTTGTGGGGTTGGGCTCTCCTACTCCCCAAATGCTTCCAATTATCAAACTGATGATCGCCAAACCGCCTTCGATTCCCACCAC TTCCTTCTCAAGTGGTTTGAACTGTATCCAGAATTCCAGCAAAATCCCTTTTACATCTCCGGAGAATCCTACGCCGGCATTTATGTCCCCACTCTCTCCG CTCAAGTCGTTCAAGGTATAAAAGCAGGAGAAAAGCCTACCATCAACTTCAAGGGTTACCTTGTCGGGAATGGAGTGGCCAACGATGAAAAGACAGGTGG GCTTGGTGCATTTGTCCATTTTGTACATGGAATGGCCCTTATTTCCGACAAAATGTTTCAGCAAGCAGCTGGTGCTTGTAAACCCGATTTCAGTGGCCAA AGTCAGAAATGCGCTGACAGCATTCGCAAAATTGACAGGGCAGTAGACTTGCTGAATATTTATGACGTTCTGGAGCCATGCTACCATGACCCAGAAGGCC AAAGGCAGAAGCAGCCGAAATTACCCACCAGCTTTCAGGAACTGGGCAAGACTGATAGGCCTCTCCAAGTCAGGAAGCGGATGTTTGGACGGGCCTGGCC TCTTTGGGCTGACCACTTCCAGAACTTCCGTCAAAATTCTTCTTCTGCTGTCAGTGATTATAGCATGCCTCTGTGGCCCCAGCTCGCCCAGAAAGCCGGC GGCGTTATGTGCGTGAATGATGAAGTTGCGACTGCTTGGCTCAACGATGAAACTGTACGGAAGGCTCTCCATGCCCAACCGGTAGCAATCGCGGGTGCAT GGGAGTTGTGTTCAGACAGGATATCATATGGGTTTGGAGCGGGGGACATGGTTCCGATCCATAGAAATCTAACCATGCAGGGATATCGAGCTCTTATTTA CAGCGGAGACCATGATATGTGTGTGCCATACACCGGGACGGAAGCTTGGACCAGCTCACTTGGTTACAGCGTCATCGACGAATGGAGGCCATGGATTTCC GGCGACGACAATCAAGTTGCTGGATACTTGGAAGGGTACGAGCATAACCTCACATTTCTGACAATTAAGGGCGCAGGGCATACGGTGCCAGAGTACAAGC CACGTGAATCTCTGGATTTTTTCACTCGGTTTCTTGATGCCAAACCGATATAA
AA sequence Show only first row Show all	>Lus10020207 pacid=23141982 polypeptide=Lus10020207 locus=Lus10020207.g ID=Lus10020207.BGIv1.0 annot-version=v1.0 MFYYFIESERNSKADPVVLWLNGGPGCSSFDGFVYEHGPFSFEKGKSRASLPRLHLNPFSWSKVSNIIYLDSPCGVGLSYSPNASNYQTDDRQTAFDSHH FLLKWFELYPEFQQNPFYISGESYAGIYVPTLSAQVVQGIKAGEKPTINFKGYLVGNGVANDEKTGGLGAFVHFVHGMALISDKMFQQAAGACKPDFSGQ SQKCADSIRKIDRAVDLLNIYDVLEPCYHDPEGQRQKQPKLPTSFQELGKTDRPLQVRKRMFGRAWPLWADHFQNFRQNSSSAVSDYSMPLWPQLAQKAG GVMCVNDEVATAWLNDETVRKALHAQPVAIAGAWELCSDRISYGFGAGDMVPIHRNLTMQGYRALIYSGDHDMCVPYTGTEAWTSSLGYSVIDEWRPWIS GDDNQVAGYLEGYEHNLTFLTIKGAGHTVPEYKPRESLDFFTRFLDAKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020207 [exp]	0	1
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	7.7	0.6303
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	10.1	0.6758
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	14.1	0.6227
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	15.0	0.6227
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	15.8	0.6227
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	16.6	0.6227
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	17.3	0.6227
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	23.0	0.5906
AT3G62650			unknown protein		Lus10010026 [exp]	24.0	0.6510
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	26.5	0.6269

Compare expression of checked genes

Lus10020207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.