Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47390 885 / 0 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT4G20960 93 / 4e-20 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026832 [exp] 1182 / 0 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10036431 [exp] 930 / 0 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10041104 [exp] 863 / 0 AT3G47390 791 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10037850 [exp] 100 / 1e-22 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10030388 [exp] 100 / 2e-22 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054000 [exp] 937 / 0 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.002G158800 [exp] 95 / 1e-20 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 67 / 2e-12 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0387 [flax] [poplar] DHFred PF01872 [flax] [poplar] RibD_C RibD C-terminal domain CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] PF08719 [flax] [poplar] NADAR NADAR domain
Representative CDS sequence Show only first row Show all	>Lus10020208 pacid=23142054 polypeptide=Lus10020208 locus=Lus10020208.g ID=Lus10020208.BGIv1.0 annot-version=v1.0 ATGCCTCTTTGTTTAGCAGCAGCTGCTTGCGCCAACTCTCCCTTCATTTGTAAAGCTTCCTCAATCTCCAGCAATCTCCACATCGACCATAGACACGGAC ATGATGCAGCCTACATCAAACGTGCTGCCCAAATTGCTGACTCCTCTGCTGGGCTGACTTCTCCCCACCCTAATTTCGGCTGCGTCCTAGTCACCCCTTC CAGTAAGGTAGCTGGGGAAGGTTATCTCTATGCCCAGGGGACCAAGCCGGCTGAGGTTCAGGCGGTAGAGGCGGCTGGTCAGTGGAGCAAAGGTGCCACT GCATATTTGAATATGGAACCTGGGGATTGCCATGGAGACCAAGCTGCTGTCAAGGCTCTTGTTGAGGCAGGGGTTTCAAGGGTGGTGGTTGGGATAAGGC ATCCGTTGAAGCATTTTCAAGGCAATGCTATTCGTGCTCTAAGAGGTGAAGGTTTGCAGGTTGATGTGCTTGGAGAAGATTTGCAGAGTACTATAGTTGA GGAAGCTCTGAAATCGTGCCTTCTTGTCAATGGTCCTTTGATTTATAGAGCTACTTCTCAAATTCCCTTTTCTTTTCTCAAGTATGCTATTACTCTTGAT GGAAAAATCGCTGCCAGTAGTGGACATGCAGCATGGATAAGCAGCAGGAAGTCAAGGAATCGAGTTTTTGAACTTCGTGGGAGAAGTGATGCTGTTATTG TTGGAGGAAATACTGTACGTAAGGACAATCCTCGGTTGACAGCTAGACACGGTGGAGATCATATGCCTTTGAGGGTTGTAATGACTCGATCTCTTGATCT TCCGGAAGAAGCAAATCTTTGGGATGTCTCTAATGTGCCCACCATGGTTGTAACCCAAAGGGGTGCAAGAAAGAGATTCCAAAAACAACTTGCTTCCAAA GGAGTTGAAGTAGTGGAGTTTGACAGTCTCAACCCAAGGGAAGTTATGGAATATTTTCATGATCGTGGCTATCTTTCTATAATGTGGGAGTGTGGGGGTA CACTTGCGGCTTCTGCTATTTCAGCTGGCGTGATACACAAGGTCTATGCATTTGTTGCCCCAAAAATCATTGGAGGTAAGAATGCACAAACTCCTGTTGG TGATCTGGGGATGGTTGAGATGTCTCAGGCTTTGGATTTAATTGACGTTTGCTATGAGCAGATTGGCCCAGACATTCTTATCAGTGGATCTCTCCAGCCT ATACCAGACCCAACACCTGTTATTCCATCACAGGATGAAACATTGGCAATGGATCCCACTGTCAACCCTTACGAATCAAGCATCATATGTTTCAACAAAG CATGGGATCCTTATGGAGCGTTTTCAAAATTTTCTCCTCATCCAATTAAGATGCCTGATGAAAACGGAGTACTAGTCACTTGGTCAAGCGTAGAGCATTA TTACCAGGCATGCAAATTTATGGGAGTCGATGATCCGGTAGCACGAGATTGCACGGAAAAGATACGATGTGCAAAGAGTCCAGAAGAAGCAGCAAGAGTT GGAAGGTCGATGCAAAGGATGCATCCTCAACTGGTGAGACCAGATTGGGAAAAAGTGAAGATTGATTTCATGTACAGTGGGTTAAGGTACAAGTTCTCAA ATTATCCTTATCTAAACTCAATGCTGCTTGCAACATCAGGGTGTGTGCTGGTTGAAGCATCACCAAATGATCTGTTCTGGGGTGGAGGCCGAGAAGGCGA GGGACTAAATTACATGGGCAGACTACTAATGAAGTTAAGATCAGAGTTGGTTGGTAAATCTTGTACGCCTGGTGAGAACACTTGCTTAACCCTTTAA
AA sequence Show only first row Show all	>Lus10020208 pacid=23142054 polypeptide=Lus10020208 locus=Lus10020208.g ID=Lus10020208.BGIv1.0 annot-version=v1.0 MPLCLAAAACANSPFICKASSISSNLHIDHRHGHDAAYIKRAAQIADSSAGLTSPHPNFGCVLVTPSSKVAGEGYLYAQGTKPAEVQAVEAAGQWSKGAT AYLNMEPGDCHGDQAAVKALVEAGVSRVVVGIRHPLKHFQGNAIRALRGEGLQVDVLGEDLQSTIVEEALKSCLLVNGPLIYRATSQIPFSFLKYAITLD GKIAASSGHAAWISSRKSRNRVFELRGRSDAVIVGGNTVRKDNPRLTARHGGDHMPLRVVMTRSLDLPEEANLWDVSNVPTMVVTQRGARKRFQKQLASK GVEVVEFDSLNPREVMEYFHDRGYLSIMWECGGTLAASAISAGVIHKVYAFVAPKIIGGKNAQTPVGDLGMVEMSQALDLIDVCYEQIGPDILISGSLQP IPDPTPVIPSQDETLAMDPTVNPYESSIICFNKAWDPYGAFSKFSPHPIKMPDENGVLVTWSSVEHYYQACKFMGVDDPVARDCTEKIRCAKSPEEAARV GRSMQRMHPQLVRPDWEKVKIDFMYSGLRYKFSNYPYLNSMLLATSGCVLVEASPNDLFWGGGREGEGLNYMGRLLMKLRSELVGKSCTPGENTCLTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	0	1
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	3.2	0.8530
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	4.2	0.8286
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	4.5	0.8669
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	5.0	0.8362
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	5.5	0.8477
AT5G41980			unknown protein		Lus10024452 [exp]	5.7	0.8201
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	6.3	0.8240
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	7.7	0.8469
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	8.7	0.7965
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	8.8	0.7956

Compare expression of checked genes

Lus10020208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.