Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03670 175 / 8e-47 ankyrin repeat family protein (.1) AT4G03500 166 / 2e-43 Ankyrin repeat family protein (.1) AT4G03460 157 / 3e-40 Ankyrin repeat family protein (.1) AT4G14390 131 / 1e-31 Ankyrin repeat family protein (.1) AT4G03450 128 / 9e-31 Ankyrin repeat family protein (.1) AT4G03490 122 / 6e-29 Ankyrin repeat family protein (.1.2) AT4G05040 117 / 2e-27 ankyrin repeat family protein (.1.2.3.4.5) AT4G03470 115 / 9e-27 Ankyrin repeat family protein (.1) AT4G14400 113 / 5e-26 ACD6 ACCELERATED CELL DEATH 6, ankyrin repeat family protein (.1.2.3) AT4G03480 111 / 3e-25 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026833 [exp] 497 / 9e-171 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10013878 [exp] 108 / 2e-25 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10038609 [exp] 107 / 2e-25 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10037894 [exp] 110 / 6e-25 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 99 / 3e-21 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10025289 [exp] 97 / 5e-21 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 96 / 2e-20 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 96 / 3e-20 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10024844 [exp] 95 / 4e-20 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G133700 [exp] 215 / 1e-63 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.011G133300 [exp] 215 / 2e-61 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.011G133400 [exp] 214 / 3e-61 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 179 / 3e-48 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 171 / 8e-46 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 171 / 9e-46 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 171 / 1e-45 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 167 / 6e-44 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G108801 [exp] 157 / 5e-42 AT4G03500 101 / 4e-23 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 156 / 3e-40 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10020209 pacid=23142009 polypeptide=Lus10020209 locus=Lus10020209.g ID=Lus10020209.BGIv1.0 annot-version=v1.0 ATGATTCAGTTGTTGGTCAACTGTGCAAAGCTTGTTGAAGTTGAAGTGGGGAAGGAGTTGCTAAGAATGGAGAATCTAGACAAGGACACGGCTCTGCATG TTGCCGTACGAAATGGGCACTTTGAGGTTGTGAATTTATTGATTAGTGAAGACCCGGAGTTGACTTTGGTTCTGAATAGTCTGGGAGAATCTTCTCTCTT TTTAGCTGTGGATCGCAAGTTCTACAAGATCGCACAACATATTATTGAAACCGTTCCTTCATGCTGTCATGGAGGAAGGTATGGCATGAATGTTCTTCAT GCGGCCATTATCAGAGCTGATAAGAATTTCTTGCAAGAGGTGCTGAAACGACATCCATCTGCCACCAAAGAAGCAGATCAGTATGGATGGATTCCTCTTC ACTATGCTGCCTATTTGGGGAATGCAGAAGTTGTTGAACTCTTTCTTCAATTCAACAACTCACTTGCTTATGTGAAGGACAAAGGCGGCATGGCTGCTCT TCATCTTTCAGCCAAGGCAGGGCATGTGAACGTTGCACAGAAGCTCACTACAATTTGCCCTGATACCTCTGAATTGCTGGACAACCACTATCGAACTGCT CTACATGTTGCAGCAGAAAACGGGCAAAGAAGTGTTGTCAGTTTTTTCCTGACGGAACAGATTTACTGGGATCTCATGAATGAGCAGGATGAAGTTGGAA ATACGCCTTTGCATTCTGCTGCGGTTCAAGGTCATTCTGAAATTGTCTTGCTGTTGGCAAATGACCCTGGAGTGGATAAAGGAGCCCTGAATAAAGCAGG ATTCACCGCATCTGACATAATAATGTCCAGCCCACTGTTCAAGCAACAGGAGAAGGTCACAGCTGGTCACAAGAACACTATTCTCCACATTGCAGCAAGA TGTGGAGGGATAAATACAGCAGAGAAGATTATTGGATTCTTTCCAGGCCTTCTGCATCAAACAAACTCCAAAGGCGACTCTCCCTTGCATGTTGCAGCAA GGTTAGGCCGCCTTGAAATGATTCAGTTGTTGGTCAACTGTGCAAAGCTTGTTGAAGTTGAAGTGGGGAAGGAGTTGCTAAGAATGGAGAATCTAGACAA GGACACGGCTCTGCATGTTGCCGTACGAAATGGGCACTTTGAGGTTGTGAATTTATTGATTAGTGAAGACCCGGAGTTGACTTTGGTTCTGAATAGTCTG GGAGAATCTTCTCTCTTTTTAGCTGTGGATCGCAAGTTCTACAAGATCGCACAACATATTATTGAAACCGTTCCTTCATGCTGTCATGGAGGAAGGTATG GCATGAATGTTCTTCATGCGGCCATTATCAGAGCTGATAAGAATTTCTTGCAAGAGGTGCTGAAACGACATCCATCTGCCACCAAAGAAGCAGATCAGTA TGGATGGATTCCTCTTCACTATGCTGCCTATTTGGGGAATGCAGAAGTTGTTGAACTCTTTCTTCAATTCAACAACTCACTTGCTTATGTGAAGGACAAA GGCGGCATGGCTGCTCTTCATCTTTCAGCCAAGGCAGGGCATGTGAACGTTGCACAGAAGCTCACTACAATTTGCCCTGATACCTCTGAATTGCTGGACA ACCACTATCGAACTGCTCTACATGTTGCAGCAGAAAACGGGCAAAGAAGTGTTGTCAGTTTTTTCCTGACGGAACAGATTTACTGGGATCTCATGAATGA GCAGGATGAAGTTGGAAATACGCCTTTGCATTCTGCTGCGGTTCAAGGTCATTCTGAAATTGTCTTGCTGTTGGCAAATGACCCTGGAGTGGATAAAGGA GCCCTGAATAAAGCAGGATTCACCGCATCTGACATAATAATGTCCAGCCCACTGTTCAAGCAACAGGAGAAGGTACGATATAGTCTTCAATGTCTACGTC ATTTCATCTTATACGTTCTTTCTGTAAAATATCAATCCATTTGTTATGTTCGTACTAATCAGTCTGCTAGAAACGATTAA
AA sequence Show only first row Show all	>Lus10020209 pacid=23142009 polypeptide=Lus10020209 locus=Lus10020209.g ID=Lus10020209.BGIv1.0 annot-version=v1.0 MIQLLVNCAKLVEVEVGKELLRMENLDKDTALHVAVRNGHFEVVNLLISEDPELTLVLNSLGESSLFLAVDRKFYKIAQHIIETVPSCCHGGRYGMNVLH AAIIRADKNFLQEVLKRHPSATKEADQYGWIPLHYAAYLGNAEVVELFLQFNNSLAYVKDKGGMAALHLSAKAGHVNVAQKLTTICPDTSELLDNHYRTA LHVAAENGQRSVVSFFLTEQIYWDLMNEQDEVGNTPLHSAAVQGHSEIVLLLANDPGVDKGALNKAGFTASDIIMSSPLFKQQEKVTAGHKNTILHIAAR CGGINTAEKIIGFFPGLLHQTNSKGDSPLHVAARLGRLEMIQLLVNCAKLVEVEVGKELLRMENLDKDTALHVAVRNGHFEVVNLLISEDPELTLVLNSL GESSLFLAVDRKFYKIAQHIIETVPSCCHGGRYGMNVLHAAIIRADKNFLQEVLKRHPSATKEADQYGWIPLHYAAYLGNAEVVELFLQFNNSLAYVKDK GGMAALHLSAKAGHVNVAQKLTTICPDTSELLDNHYRTALHVAAENGQRSVVSFFLTEQIYWDLMNEQDEVGNTPLHSAAVQGHSEIVLLLANDPGVDKG ALNKAGFTASDIIMSSPLFKQQEKVRYSLQCLRHFILYVLSVKYQSICYVRTNQSARND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	0	1
AT1G78760			F-box/RNI-like superfamily pro...		Lus10024701 [exp]	1.4	0.8648
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	2.4	0.8616
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	4.6	0.8488
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	6.7	0.8346
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	12.0	0.8057
					Lus10033298 [exp]	13.1	0.8410
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	13.7	0.8334
AT5G17460			unknown protein		Lus10009117 [exp]	16.1	0.8242
AT2G32760			unknown protein		Lus10037826 [exp]	18.3	0.8368
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	21.4	0.7841

Compare expression of checked genes

Lus10020209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.