Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02780 417 / 5e-148 IDI2, IPIAT1, IPP2 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1) AT5G16440 402 / 5e-142 IDI1, IPP1 isopentenyl diphosphate isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026834 [exp] 522 / 0 AT3G02780 420 / 2e-149 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053700 [exp] 442 / 7e-158 AT3G02780 427 / 4e-152 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10020210 pacid=23142011 polypeptide=Lus10020210 locus=Lus10020210.g ID=Lus10020210.BGIv1.0 annot-version=v1.0 ATGTCAGCTACCACTGCCAGACTCTTATACAAGATACCTACCACCACCACCACCACCACCGTTAATCGTCTTTCATCTTCTTCACTTCCCTCCTTTTCCT TCCTTTCTTCTTCTTCTCGACTCCGATCTCCACGCCCTCACTTCCTTACAACTACTGTCTTTTCCTCCTCCTCCTCTCGTCCCGTCGCGACCACCGCCAT GGGTGACACTCCCGATGCTGGCATGGACGCTGTCCAGAGGCGCCTCATGTTTGAAGACGAGTGCATTTTGGTGGATGAGAATGATCAGGTTGTTGGCCAT GATTCCAAATATAACTGTCATTTGTGGGAAAATATTCTGAAAGGAAATGCTTTGCACAGAGCTTTTAGCGTGTTTCTCTTCAACTCCAAGTATGAGCTGC TCCTTCAGCAACGTTCTGCTACAAAGGTGACCTTCCCCCTTGTTTGGACAAACACTTGCTGCAGCCATCCTTTGTTTCGTGAGCCTGAGCTCATAGATGG AGAATCTCTTGGCGTGAGGAATGCCGCCCAAAGGAAGCTTCTGGATGAACTCGGTATTCCAGCTGAGGATGTGCCAGTGGACCAATTTTTGCCACTGGGC CGTATTCTGTACAAGGCTCCTTCTGATGGGAAATGGGGAGAGCATGAACTTGATTACCTGCTCTTCATGGTTCGTGATGTGAATGTAAACCCAAACCCCG ATGAGGTGGCCGAGATCAAGTATGTGAACCGGGAGGAGTTACGAGAGCTGTTGAGGAAAGCAGATGCGGGAGAAGGAGGGTTGAAACTGTCGCCGTGGTT TAGGCTAGTAGTAGATAACTTCCTGTTCAAGTGGTGGGATGATGTGGAGAAGGGAACACTCAAGGATGCAGTTGACATGAAAATTCACAAGCTCACTTGA
AA sequence Show only first row Show all	>Lus10020210 pacid=23142011 polypeptide=Lus10020210 locus=Lus10020210.g ID=Lus10020210.BGIv1.0 annot-version=v1.0 MSATTARLLYKIPTTTTTTTVNRLSSSSLPSFSFLSSSSRLRSPRPHFLTTTVFSSSSSRPVATTAMGDTPDAGMDAVQRRLMFEDECILVDENDQVVGH DSKYNCHLWENILKGNALHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLFREPELIDGESLGVRNAAQRKLLDELGIPAEDVPVDQFLPLG RILYKAPSDGKWGEHELDYLLFMVRDVNVNPNPDEVAEIKYVNREELRELLRKADAGEGGLKLSPWFRLVVDNFLFKWWDDVEKGTLKDAVDMKIHKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	0	1
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	1.0	0.9443
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	6.0	0.9369
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	6.5	0.9004
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	8.1	0.9221
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	8.1	0.9273
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	8.9	0.9060
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	12.0	0.9273
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	12.8	0.8951
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	14.0	0.9077
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	14.4	0.8989

Compare expression of checked genes

Lus10020210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.