Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16450 104 / 3e-29 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) AT3G02770 87 / 1e-22 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) AT5G56260 86 / 9e-22 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020212 [exp] 252 / 2e-87 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10026835 [exp] 218 / 7e-74 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10027126 [exp] 79 / 3e-19 AT5G56260 278 / 2e-97 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10032885 [exp] 72 / 1e-16 AT5G56260 279 / 9e-98 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085700 [exp] 134 / 4e-41 AT5G16450 282 / 5e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.019G053800 [exp] 128 / 2e-38 AT5G16450 292 / 5e-103 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.011G169700 [exp] 85 / 1e-21 AT5G56260 265 / 3e-92 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020211 pacid=23141948 polypeptide=Lus10020211 locus=Lus10020211.g ID=Lus10020211.BGIv1.0 annot-version=v1.0 ATGAGAAGCCAGAGCTCGAATCCCAATATCACATCCGTTGATCTCATCAACATCCCTTATGCATCCATTCACAACAATCCCAGCCCATCCATTGTTCTGA GCTTGAACCACAGGGTTCCCTCCCAGGATTGCGCACCTCAAACTGCCACCACCATCCACAACAAGGACTCTGCCGTTGCCCTTTTCTTCCAGGAACTCGC GGATCAGGACATTGTCTTCGAACACCTTGAGGGTGACGACTGGCCCGCTGAAGACCTGGCGGCGACCGTATATCTGGAAGATTGGCTGGAGTGCCCTGAG CTCACCGCTGACGATCAGCTGAGGGTTTGCATCACAGACTTCGGCAGTTGTGACCAGTGCCATCTGTTTTTAATCACAAGGGTACAAGGGCATCATCATA CAGAATACAAGAAGGGTATCAGAGAAGCATAA
AA sequence Show only first row Show all	>Lus10020211 pacid=23141948 polypeptide=Lus10020211 locus=Lus10020211.g ID=Lus10020211.BGIv1.0 annot-version=v1.0 MRSQSSNPNITSVDLINIPYASIHNNPSPSIVLSLNHRVPSQDCAPQTATTIHNKDSAVALFFQELADQDIVFEHLEGDDWPAEDLAATVYLEDWLECPE LTADDQLRVCITDFGSCDQCHLFLITRVQGHHHTEYKKGIREA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020211 [exp]	0	1
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10040961 [exp]	6.3	0.7236
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	17.6	0.7254
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	19.6	0.7206
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	20.3	0.7294
AT3G22530			unknown protein		Lus10035239 [exp]	24.5	0.6776
					Lus10024718 [exp]	25.7	0.7159
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	30.6	0.7076
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	50.8	0.7135
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	65.3	0.6695
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	67.5	0.7009

Compare expression of checked genes

Lus10020211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.