Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16450 299 / 9e-106 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) AT3G02770 297 / 9e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) AT5G56260 244 / 4e-84 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026835 [exp] 336 / 3e-120 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10032885 [exp] 256 / 2e-88 AT5G56260 279 / 9e-98 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10027126 [exp] 254 / 5e-88 AT5G56260 278 / 2e-97 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10020211 [exp] 243 / 9e-84 ND 225 / 8e-77
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053800 [exp] 324 / 1e-115 AT5G16450 292 / 5e-103 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.013G085700 [exp] 313 / 2e-111 AT5G16450 282 / 5e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.011G169700 [exp] 251 / 1e-86 AT5G56260 265 / 3e-92 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF03737 [flax] [poplar] RraA-like Aldolase/RraA
Representative CDS sequence Show only first row Show all	>Lus10020212 pacid=23142000 polypeptide=Lus10020212 locus=Lus10020212.g ID=Lus10020212.BGIv1.0 annot-version=v1.0 ATGGCACTGGTCACAACTGCCGAAGTCTGTGATGCAAACCCTCAGCTGATCGTCAGCGGTGAGCTCAGGGCACTCCAGCCAATCTTCCAGATATACGGTC GCCGCCAGGTCTTCAGCGGGCCAGTCGTCACCCTCAAGGTGTTCGAAGACAATGTCCTGATCCGCGAGTTCCTGGAAGAAAAGGGCAACGGCAGAGTCCT TGTTGTGGATGGTGGTGGCAGTTTGAGGTGCGCAATCCTGGGAGGGAACCCTGTGGTTCAAGCTCAGAACAATGGATGGGCTGGGATTGTTGTGAATGGA TGCATAAGGGATGTTGATGAGATCAACGGATGTGATATTGGGATTCGAGCTCTGGCTTCTCATCCCATGAAAGCTAACAAGAAAGGAATTGGGGAGAAGC ACGTCCCTGTCACTGTTGCTGGGACTAGGATCTGTGATGGAGATTGGCTTTATGCTGATACTGATGGCATCCTTATCTCTCGAACCGAGTTGTCTGTCTG A
AA sequence Show only first row Show all	>Lus10020212 pacid=23142000 polypeptide=Lus10020212 locus=Lus10020212.g ID=Lus10020212.BGIv1.0 annot-version=v1.0 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPVVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNG CIRDVDEINGCDIGIRALASHPMKANKKGIGEKHVPVTVAGTRICDGDWLYADTDGILISRTELSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10020212 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	7.1	0.6738
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	11.1	0.6701
AT1G67340			HCP-like superfamily protein w...		Lus10006418 [exp]	12.6	0.6726
					Lus10003030 [exp]	36.2	0.6445
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	56.9	0.5865
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	80.5	0.5509
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	86.7	0.5702
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	97.7	0.5755
AT1G55365			unknown protein		Lus10013409 [exp]	126.3	0.5546
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	135.6	0.5379

Compare expression of checked genes

Lus10020212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.