Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16460 246 / 3e-78 Putative adipose-regulatory protein (Seipin) (.1) AT2G34380 124 / 4e-31 Putative adipose-regulatory protein (Seipin) (.1) AT1G29760 119 / 4e-29 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026836 [exp] 689 / 0 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1) Lus10007323 [exp] 122 / 2e-31 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1) Lus10034735 [exp] 123 / 4e-31 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1) Lus10033273 [exp] 122 / 1e-30 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085850 [exp] 335 / 2e-112 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1) Potri.011G072200 [exp] 129 / 7e-33 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06775 [flax] [poplar] Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence Show only first row Show all	>Lus10020213 pacid=23142082 polypeptide=Lus10020213 locus=Lus10020213.g ID=Lus10020213.BGIv1.0 annot-version=v1.0 ATGGCGGCTGACAAGGAGGAGCAAGATAGCTACTACCGCAATCAAGATTGGTTCACGAAATTGTTGTCATTCCAAACAGACATCATCTACAACTGCATTG TTTCTCTCTGGGCTCCTTTCCAAACTCTGTCTTCCATGGCATCGGAATCCTACCGCAGGACGGAGGATCAGATGGCCACTTGTAACAAAGTTGGTCACAA GCTAATCAGCCACGGCAGATTCGTGACGATGATGAGGAAGATTGGATTGGGTGTTGTCGGCGTCGTTCATGCCTCCTTGGTACTGGTGATGGTCATGGCT TTGTCTGTGGGTTTAGGAGTTGGGTTGATCAGAATGTTTGCTGAGGAGCCTGTTTTCTTGAGGCACAAGCTTCTGTTTGACTACACTCTTCCAAACCCAA CTGCCACTCTTCACTTGGGTGGTAAACCCTCTACTGCTGCTGCTGCTATACCAGTTGGTCATACCTTTCATGTCTCTCTGGCTCTTCTCATGCCCGAATC CGATTACAATCGTCACATTGGTCTCTTCCAGCTGAGTGCAGAAGTGTTATCCGCCAGTGGGGATGTGATGGCGAGATCCAGCCAACCCTGCATGCTCAAA TTCAGAAGCTTCCCAGTGCGGTTGGCTCGAATTTTCGCCATGGGAATCCCTCTGTTACTAGGAATATCTGACGAAACCCAGAAGATATCCGTCCAGCTCT TGAAACACAAGGAAGTTTACTACCAAAGAACAGGGGCCATCCGAGTTACACTGAGTCCCAGGTCCGGAACTTCTTACCTTCCACAGCTCTACGAGGCCGA ATTGGCCATCAACTCCCAACTTCCATGGTCCAAGGCGCTGATGAAGAGATGGAAATGGACACTTTACGTTTGGACTTCGCTCTACATCTACATTGGCTTT GTGATCATCCTCATCTCTTGCTTCCGTACCCTTCTCTTCCCTATCCCGGCTCTGATTCTTAATCGGCAGGGCCGCGGAGCTAGGGAAATCAACGATGGTG ATGCTGAAGACGCGCGAAGAAGTGGGGGAGAAAGGGAGACGACTTTAGAGATGGTGAGGAAATGGCAGATGCGAAGGAGGAAGAGGAAGGTTTCCAGTTA TCTGTATGGAGGAGATGAAACAGGAGCTGAGCCATCATCAGCAGTCTCTAGCATCACTATGAGCTGCAGAGATGATGGTAGTAGCTCTGTCCCTGAAGAG GGAATTGCTGACAGTGAATCCGTTTGTTTTGGTGGTTAA
AA sequence Show only first row Show all	>Lus10020213 pacid=23142082 polypeptide=Lus10020213 locus=Lus10020213.g ID=Lus10020213.BGIv1.0 annot-version=v1.0 MAADKEEQDSYYRNQDWFTKLLSFQTDIIYNCIVSLWAPFQTLSSMASESYRRTEDQMATCNKVGHKLISHGRFVTMMRKIGLGVVGVVHASLVLVMVMA LSVGLGVGLIRMFAEEPVFLRHKLLFDYTLPNPTATLHLGGKPSTAAAAIPVGHTFHVSLALLMPESDYNRHIGLFQLSAEVLSASGDVMARSSQPCMLK FRSFPVRLARIFAMGIPLLLGISDETQKISVQLLKHKEVYYQRTGAIRVTLSPRSGTSYLPQLYEAELAINSQLPWSKALMKRWKWTLYVWTSLYIYIGF VIILISCFRTLLFPIPALILNRQGRGAREINDGDAEDARRSGGERETTLEMVRKWQMRRRKRKVSSYLYGGDETGAEPSSAVSSITMSCRDDGSSSVPEE GIADSESVCFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16460			Putative adipose-regulatory pr...		Lus10020213 [exp]	0	1
					Lus10010418 [exp]	5.5	0.7032
AT5G52975			Protein of unknown function (D...		Lus10032886 [exp]	7.6	0.6972
AT2G48060			unknown protein		Lus10029968 [exp]	14.8	0.6503
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	18.7	0.5844
					Lus10008653 [exp]	20.2	0.5615
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	20.6	0.6001
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	21.8	0.6611
					Lus10002099 [exp]	25.7	0.5821
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	26.8	0.5821
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	27.9	0.5821

Compare expression of checked genes

Lus10020213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.