Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13480 709 / 0 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 112 / 5e-26 PRL1 pleiotropic regulatory locus 1 (.1) AT4G02730 102 / 2e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 99 / 7e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 98 / 5e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 97 / 6e-21 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 97 / 8e-21 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 96 / 2e-20 TAF5 TBP-associated factor 5 (.1) AT2G43770 93 / 2e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 92 / 3e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026837 [exp] 1058 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006511 [exp] 112 / 3e-26 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 111 / 1e-25 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10021059 [exp] 107 / 4e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 105 / 2e-23 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 103 / 9e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 97 / 7e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033802 [exp] 100 / 8e-22 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10013452 [exp] 100 / 2e-21 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125206 [exp] 890 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 787 / 0 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 784 / 0 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 113 / 2e-26 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.008G002300 [exp] 104 / 6e-23 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 102 / 1e-22 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 99 / 1e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 99 / 1e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.006G263400 [exp] 96 / 2e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.019G096900 [exp] 93 / 2e-20 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10020214 pacid=23142073 polypeptide=Lus10020214 locus=Lus10020214.g ID=Lus10020214.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTTACACAAAGACGAGCAGTTGATTATACAAGTACCGCTGTCCGGTACATGCAGATTCGGACATGGCAGCGGGATTCAAGAGATAGAACAG GATTGCAGCCTACCCCTGCAGCAGCCATTGACATGTTACCTACAGTTGCTTATTCTGATAACCCATCAACAAGCTTCTCTTCAAAGTTTGTGCATACATC TTTAAACAAAAACCGTTGTTCTATTAATCGTGTACTGTGGACTCCTAATGGCAGACGTCTAATAACCGGATCTCAAAGCGGGGAGTTCACTCTGTGGAAT GGACAATCATTTAATTTTGAAATGATACTCCAGGCCCATGACCAAGCGATCAGGTCTATGGTGTGGAGTCACAATGACAACTGGATGGTCTCTGGTGATG ATGGGGGAGCCATTAAGTATTGGCAGAGCAACATGAATAACGTAAAGGCTAATAAAACTGCTCATAAAGAATCAGTTCGTGACTTGAGGACTGATTTGAA ATTCTGCTCTTGCTCTGATGATACTACTGTTAAAGTCTGGGACTTTGCTCGGTGCCAAGAAGAGCGTTCTTTAACTGGGCATGGTTGGGATGTGAAGAGT GTTGACTGGCACCCTACCAAATCTTTGCTAGTTTCAGGTGGCAAAGACAATCTTGTAAAGCTTTGGGATGCCAAAAGTGGGAGGGAACTTTGTTCATTTC ATGGCCACAAAAATACAGTGCTTTGTGTGAAGTGGAACCAAAATGGTAACTGGGTGCTAACTGCTGGAAAGGATCAAACTATCAAGCTTTATGATATAAG AGCTATGAAGGAGCTGGAGTCTTTCCGTGGACATAAGAAAGATGTGACTGCGTTGGCGTGGCACCCATCTCATGAAGAGTACTTTGTCAGCGGGAGCTAT GACGGTTCTATCTACCACTGGCTTGTCGGACATGAAACTCCTCAAATTGAAGTTCCTGCAGCTCATGACAATAGCGTGTGGGACCTTGCATGGCATCCTA TTGGATATTTGCTTAGCAGTGGTAGCCATGATCACACCACAAAGTTTTGGTGCAGAAATAGGCCCGGAGATACTGCAAGAGACAAATTCAACATGAATCA GAACCAAGGCTATGGTGAGCAAAATTCAAATCTTGTTGGTCGTTTACCTGGTAATTTTTCTCTTCCGGAGCAACCGTCTCCAGGGCCCTTTCCTCCTGGA TTGATCCGAAACGAAGGGACTATTCCCGGTGTGGGAGCTGCAATGCCTTTATCCATACCTTCTCTAGATCCCTCACTAGGGGATCAGAACCAAGGCATGC CAATGTCTATTCCATTGGGAGCTCCTCCTCTCCCTCCTGGTCCCCATCCCTCCCTTCTTACTACCAACCAACAGAGGGGATATCAGCAAAATCAGCACCC GCAAATGTCCCCACTGCCTATGCCACCAAATATGCAGCAGCTCCAACCTCCGAACCACCTGCCCTTGCTTCAACATCCGCATCTACCCCGCCCTCCGCAA ATGGCCCCTCATGGCATGCCAGGATCTCTGGCTGCACCTTCGATGCCCGGTCAAAGGAGAAGTGTCAAATACTGGCATTTGCTTACGAAATCACATTTTT CGAGTGTCTCGCATCAGATGGTCTCGCCAATGACACAAGGACATTTTATGGGCATGAATCCGATGCACTCAGGTTCACTGCCCGCAAGTGGTGGCTTCCA GAATGGTATGCCAAATATGCAGGGTCCGTCAAATGCAACTGGAGGCCAAATGTATCAACAAAATAGTCCATTTAACCGACCACAGGGTGGGCAGATGCCG ATGATGCCAGGCTATAATCCATACCAGAATGGGAATCAATCGGGTATGCCACCACCACTGCCTCCAGGTCCGCCGCCGCACTCACAGACACCTCAATGA
AA sequence Show only first row Show all	>Lus10020214 pacid=23142073 polypeptide=Lus10020214 locus=Lus10020214.g ID=Lus10020214.BGIv1.0 annot-version=v1.0 MRKLTQRRAVDYTSTAVRYMQIRTWQRDSRDRTGLQPTPAAAIDMLPTVAYSDNPSTSFSSKFVHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWN GQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKTAHKESVRDLRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS VDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTAGKDQTIKLYDIRAMKELESFRGHKKDVTALAWHPSHEEYFVSGSY DGSIYHWLVGHETPQIEVPAAHDNSVWDLAWHPIGYLLSSGSHDHTTKFWCRNRPGDTARDKFNMNQNQGYGEQNSNLVGRLPGNFSLPEQPSPGPFPPG LIRNEGTIPGVGAAMPLSIPSLDPSLGDQNQGMPMSIPLGAPPLPPGPHPSLLTTNQQRGYQQNQHPQMSPLPMPPNMQQLQPPNHLPLLQHPHLPRPPQ MAPHGMPGSLAAPSMPGQRRSVKYWHLLTKSHFSSVSHQMVSPMTQGHFMGMNPMHSGSLPASGGFQNGMPNMQGPSNATGGQMYQQNSPFNRPQGGQMP MMPGYNPYQNGNQSGMPPPLPPGPPPHSQTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	0	1
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	1.0	0.8761
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	5.7	0.8555
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	17.3	0.8595
AT5G53620			unknown protein		Lus10032948 [exp]	18.2	0.8759
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	20.1	0.8522
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	24.0	0.8347
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	24.2	0.8198
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	24.5	0.8064
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	26.5	0.8194
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	29.1	0.8671

Compare expression of checked genes

Lus10020214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.