Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 266 / 7e-81 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26640 247 / 1e-75 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 237 / 2e-71 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G38470 234 / 3e-70 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 234 / 4e-70 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26440 228 / 2e-67 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G37260 184 / 4e-53 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 184 / 3e-52 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT5G07100 143 / 2e-39 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G12020 148 / 2e-37 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026838 [exp] 899 / 0 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 282 / 2e-86 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 279 / 5e-85 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10016595 [exp] 254 / 3e-77 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 251 / 8e-76 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 246 / 4e-74 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10030424 [exp] 240 / 4e-73 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10032580 [exp] 238 / 8e-73 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10026634 [exp] 238 / 2e-72 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086000 [exp] 441 / 2e-147 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G053900 [exp] 379 / 5e-126 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 297 / 4e-92 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 283 / 1e-86 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.010G163000 [exp] 248 / 2e-75 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G087900 [exp] 249 / 3e-75 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 247 / 1e-74 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.004G120800 [exp] 238 / 2e-71 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.019G123500 [exp] 237 / 2e-70 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.006G133200 [exp] 233 / 4e-70 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10020215 pacid=23142004 polypeptide=Lus10020215 locus=Lus10020215.g ID=Lus10020215.BGIv1.0 annot-version=v1.0 ATGGACTTTGAATTTCCTGCAGAGTTCTCGAAAGAGGCAGCTGCAACAATTTGTTCTAGGGATCTGGTCATCGATATGAAACCAATAAACAGTATGGCTC AACCCAACTTCATTGATGCTCAGGTTTGTGGCTCAGACGTTCCTAGAAACCAAACCTCGACCAAAAGGGGGCCTATAAAGGGTAAAATTGATGGTATGCA TATGGAAGACCAGAAAGGCACATTCATGGGAACTGGAGGTGGGAGAACATCGGAAGATGGATACAGTTGGAGGAAGTATGGACAAAAGCAGGTGAAAGGT AGTGAATATCCAAGGAGCTATTACAAGTGTACCAGTCTAAGTTGTCAGGTGAAGAAGAAGATAGAGCGTTCACATGATGGTCAAATAACCGAAATAATCT ACAAAGGTGCTCATAACCATCCTAAAACGCAGTCAGTTCGAAGAGCCCAGCCTGACTGGTGCCATGATGTGCCAGAGATTGATGATGGCAATGAAAGCTG TGTCAAAACTGAAGCTGGTTCCGGTCAGAAAAATAATGAACCTGGGTCTGATTGGAGAGCTGAAGGTATGGAAAGAACATCTTCACCATCTGTTGTGACT GAGCTTTCTGATCTGCTATCAACTGGCCAAGGAAAACCAGTGGTGACGGTTGAATCCGTTGGAACTCCAGAGCTTTCCTCTGCAGTTGTCAGTCACGAAG ATGATGATGATGGGATAATAATTGGAGGTTACACTGACGAGGAAGAATCTGATTCCAAAAGAAGAAAGACAGAGAGCTGCATGGTTGAGGCAAATATGAC ATCTAGGGCTGTCAGACAACCAAGAGTAGTCGTCCAAATAGAGAGCGAAATAGACATCCTGGATGATGGATATCGCTGGAGGAAGTATGGCCAAAAAGTT GTCAAAGGCAATCCAAACCCGAGGAGTTATTACAAGTGCACAAGCCCCGGATGTACGGTGAGGAAGCATGTGGAGAGAGCCTCCCACAACCTGAAATATG TTATCACAACATACGAAGGGAAGCATAATCACCAAGTCCCGGTAGCTAAAAACGGGAACACCTTGAGCTCAAACAGTTGCGGTTTGTCCTCAGCACTCTC CAATCTACAGCCTGGATCGGCATTAGCCAGAGGGCTCTCCAGTCTGAAGCAAGAATCACAGGTGCAAAGATCATCATCGTCAGTATTCAATAACAGCGAG TATATGAGAAGCAGCAGCTTCAGTGGAAACTTGGTTAGTGAGATGAAGGTGGGAGGACCCTCACTTTATCCAATGAATTTCCCTTCCGTACAGAGCAGCA TGGCTTATGGTTCTTACGGGTTCAATTCCAACCGGACGACACCAGTCCATCTTCCGGGTTCCATGGCATCGCTTATTCCTCAGTTCCCCAGGTCCTCGCT GTCTTCGAACCTACACACATTGGGCGGCATCGAAATGTTAAATAACGGTGGTGGTATGGGGATGGGAATGGGAATAATGGGTCAAGTTCATCAGCCTTAC TTCCCAGCAGCTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTCAGCAGTTGATGATGATGCCTAAGCAAGAGAGGAGAGATGATAATGTGTACAATTCTT CTAGCACATCCTCGTCGGTATTGAACCAACGCATTATGGGGAAGTTTGCATCTTAA
AA sequence Show only first row Show all	>Lus10020215 pacid=23142004 polypeptide=Lus10020215 locus=Lus10020215.g ID=Lus10020215.BGIv1.0 annot-version=v1.0 MDFEFPAEFSKEAAATICSRDLVIDMKPINSMAQPNFIDAQVCGSDVPRNQTSTKRGPIKGKIDGMHMEDQKGTFMGTGGGRTSEDGYSWRKYGQKQVKG SEYPRSYYKCTSLSCQVKKKIERSHDGQITEIIYKGAHNHPKTQSVRRAQPDWCHDVPEIDDGNESCVKTEAGSGQKNNEPGSDWRAEGMERTSSPSVVT ELSDLLSTGQGKPVVTVESVGTPELSSAVVSHEDDDDGIIIGGYTDEEESDSKRRKTESCMVEANMTSRAVRQPRVVVQIESEIDILDDGYRWRKYGQKV VKGNPNPRSYYKCTSPGCTVRKHVERASHNLKYVITTYEGKHNHQVPVAKNGNTLSSNSCGLSSALSNLQPGSALARGLSSLKQESQVQRSSSSVFNNSE YMRSSSFSGNLVSEMKVGGPSLYPMNFPSVQSSMAYGSYGFNSNRTTPVHLPGSMASLIPQFPRSSLSSNLHTLGGIEMLNNGGGMGMGMGIMGQVHQPY FPAAAGGGGGGGGGQQLMMMPKQERRDDNVYNSSSTSSSVLNQRIMGKFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	0	1
AT5G13260			unknown protein		Lus10002574 [exp]	3.0	0.8432
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	3.9	0.8207
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	4.0	0.8192
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	4.0	0.8491
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	4.9	0.8236
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	5.3	0.8522
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	5.3	0.8212
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	7.3	0.8135
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10040495 [exp]	7.4	0.7837
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	7.5	0.8377

Compare expression of checked genes

Lus10020215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.