Plant FIBer expression Database

Lus10020216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02790 143 / 3e-45 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
AT5G16470 139 / 5e-44 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026839
[exp]
213 / 1e-72 AT3G02790 146 / 1e-46 zinc finger (C2H2 type) family protein (.1)
Lus10041105
[exp]
166 / 4e-54 AT3G02790 153 / 1e-49 zinc finger (C2H2 type) family protein (.1)
Lus10036432
[exp]
162 / 9e-53 AT3G02790 150 / 9e-49 zinc finger (C2H2 type) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G053500
[exp]
154 / 1e-49 AT3G02790 160 / 2e-52 zinc finger (C2H2 type) family protein (.1)
Potri.013G086400
[exp]
148 / 3e-47 AT3G02790 162 / 1e-53 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10020216 pacid=23142048 polypeptide=Lus10020216 locus=Lus10020216.g ID=Lus10020216.BGIv1.0 annot-version=v1.0
ATGACGGGAAAGGCAAAGCCGAAGAAGCACACGGCCAAGGAGATAGCGGCCAAGGTTGACGCTGCCACCACTAACAGAGGCGGAGGCAAAGCCGGATTAG
TTGACAGGACTGGCCTAACCAAGGGAGGCCATGCCAAATTCGAGTGCCCTCTCTGCAAGGTCACTGCTCCCGATATCAAATCCATGAAGATCCACCACGA
AGCTCGCCATCCTAAGCTCCCATTCGAGGAAGACAAGATCGTCAATCTCCACGCTTCAACCGCCGTCGCCGCAGCTGCCCCCTCCGCTCCTGCTGCTGCT
GTTGCTGATACCTCCGGCAAGCCCCGTCCTGGAATCACTGCTGCTGCCGCTGCTGATACCTCCGGGAAGCCACGTCCTGGAATCAGAGGAAGCTTGAAGA
AGTAA
AA sequence
>Lus10020216 pacid=23142048 polypeptide=Lus10020216 locus=Lus10020216.g ID=Lus10020216.BGIv1.0 annot-version=v1.0
MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLVDRTGLTKGGHAKFECPLCKVTAPDIKSMKIHHEARHPKLPFEEDKIVNLHASTAVAAAAPSAPAAA
VADTSGKPRPGITAAAAADTSGKPRPGIRGSLKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10020216
[exp]
0 1
AT3G15210 AP2_ERF ATERF4, RAP2.5... RELATED TO AP2 5, ethylene res... Lus10029987
[exp]
1.4 0.9158
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10026839
[exp]
1.4 0.9150
AT2G17265 DMR1, HSK DOWNY MILDEW RESISTANT 1, homo... Lus10001387
[exp]
3.9 0.8864
AT1G07310 Calcium-dependent lipid-bindin... Lus10040692
[exp]
5.7 0.8794
AT2G48010 RKF3 receptor-like kinase in in flo... Lus10042679
[exp]
7.1 0.8621
AT3G55780 Glycosyl hydrolase superfamily... Lus10028258
[exp]
7.2 0.8206
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10022023
[exp]
9.8 0.8368
AT5G49525 unknown protein Lus10011181
[exp]
13.0 0.8293
AT1G27310 NTF2A nuclear transport factor 2A (.... Lus10035202
[exp]
13.5 0.8396
AT1G15710 prephenate dehydrogenase famil... Lus10023121
[exp]
14.1 0.8490

Lus10020216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.