Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22400 939 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 852 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 91 / 1e-18 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 91 / 1e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G13180 72 / 7e-13 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT1G06560 55 / 2e-07 NOL1/NOP2/sun family protein (.1) AT5G26180 50 / 5e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G66180 48 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026840 [exp] 1545 / 0 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 94 / 2e-19 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023095 [exp] 92 / 9e-19 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 71 / 3e-12 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10028444 [exp] 56 / 9e-08 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10041897 [exp] 53 / 9e-07 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007337 [exp] 51 / 3e-06 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020761 [exp] 49 / 1e-05 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10025004 [exp] 47 / 5e-05 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096100 [exp] 1135 / 0 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G369600 [exp] 92 / 6e-19 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G098850 [exp] 73 / 6e-15 AT2G22400 73 / 9e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G368500 [exp] 69 / 7e-12 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.007G056800 [exp] 57 / 4e-08 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.006G224000 [exp] 56 / 8e-08 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G204900 [exp] 48 / 2e-05 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10020217 pacid=23142008 polypeptide=Lus10020217 locus=Lus10020217.g ID=Lus10020217.BGIv1.0 annot-version=v1.0 ATGGGCGGCAGAGGGAGAGGCAACAGGTCTAGAACTCAACGGAAGCACTTCCGAGATGGCCGAGAGAATGTCTGGAAACGCTCTAAGTCTGACCCTTCCG GCGATACCGACGGCGCTGCTACTGCTGTCGCTGCGGAGAAACGTAGCTGGCAGCCTTTTGCCACTCAGAACGCTGCCTTCGATGACTACTACAAGGAGCA AGGAATCGTGTCCACGGAGGAGTGGGATACTTTCATGGAAGTTCTTCGCAGCCCATTGCCGGCTGCTTTTAGAATAAACTCAAGTAGCCAGTTTTCAACA GATATTAGATTGCAACTGGAGAATGACTTTATGAAAACTCTTCGAGCTGAGGGCGCTGATGGTGTTGAAGTGGAGGTTGTAAAACCATTGCCTTGGTACC CTGATAATCTTGCTTGGCACTCAAATTTTTCTCGCATGCAGCTGAGAAAAAATCAAACTCTTGAGAGGTTCCATGAATTCTTGAAGCTAGAAAACGAAAT TGGAAACATTACTAGGCAGGAGGCTGTTAGCATGGTTCCACCACTTTTCCTCGACGTACGCCCGGAACATTTTATCCTTGATATGTGTGCGGCACCTGGT TCAAAAACATTTCAGTTGCTTGAGATTATATATCAATCAACAAAACCAGGATTACTTCCAGATGGAATGATCATAGCAAATGATCTTGATGTTCAAAGAT GTAACCTTCTCATTCACCAAACAAAGAGAATGTGCACCGCCAACCTGATTGTCACAAACAATGAGGCCCAGCAGTTACCTGGCTGCCGCCTTAGCAAGGT TTTGCCTAAACATGAGCGAAATATGGGTCAACTGCTCTTTGATCGTGTCCTGTGCGATGTTCCCTGTAGTGGAGATGGCACCCTCCGCAAGGCTCCGGAT CTGTGGAGAAAATGGAGTTCGGGCATGGGAAATGGTCTTCACAACCTACAAATTCAAATAGCGATGCGTGGTCTTGCCTTGCTAAAAGTTGGTGGGAAAA TGGTGTACTCAACTTGCTCAATGAATCCAGTTGAGAATGAGGCTGTTGTTGCAGAGATTTTAAGAAAGTGTGGAGGGTCTGTTGAACTACTTGATGTGTC AAATGAACGTCCCGATCTTGTTCGTCGGCCTGGCTTACGAAAGTGGAAGGTGCGTGACAAAGGTAATTGGTTAGCTTCACACAAAGATGTCTCCAAACAC CGTCATTTCGGAGTTGTTCCCAGCATGTTTCCATCTGGCCGAACTTATGTTGCTCCAAGTGACAATGATACTAAAAACGAGAATTGTGGTAATTCCGAGG ATGCATTGACTCCAAACGATGGTTTTGATGAAGAAGCTTCTGATCTGCCACTGGAACGCTGCATGAGGATAGTACCTCATGATCAGAACAGCGGCGCCTT TTTCATCGCTGTACTGCAGAAGGTCTCTCCTTTGCCAGCAATCCCAGAAAACCCCAAAAAACAGAAGAACTCGTCAACTAAAAAGGATGCAACTCAAGAA AAGATGTCAGATACAGCAGTTGAAGAAGATATTGATGCACAAGAGCTGAAGTCAGAAAATGATGTCATGGAAATGGCCGCTTCTGAAGCTGTTTCAGATA TTGATTTGGCAGATAATGAAGAAGATACAGTTCTGGTGGAAGCTGAAGCTGGTCCACGCGATGTGTCTTCTGAAAATGGTTTAGAAGAAGACGTGCTGCT ACCTGTTGCTGTTGATGAGAAAGTTGATACTGAGAAGGTTGTTGGGAAGCGGAAGTTGCAAATTCAAGGAAGATGGAAAGGGGTGGATCCTGTCCTTTTC TTCAATGATGAAGCTACCATGAACAGTATAATTGATTTCTATGGTATTGATGAGTCATTTCCGTTCAAGGGCCATTTGATATCAAGAAACGTTGACAAGA ACCATGTGAAGAGAATTTATTACGTCTCAAAGTCGGTGAAGGAAGTTCTTGAGCTCAATTTCTTTGTTGGCCAGCAGCTTAAGATTGCTTCAGTGGGCTT GAAAATGTTTGAACGGCAAACATCAAGAGAGGGAACCACTACTCCATGTTGTTTCCGGATATCTTCTGAGGGGCTGCCTTTGATTCTTCCTCACATCACC AAACAAATCTTATATGCATCAACGGTTGACTTTGTTAATCTCCTGAAGAACAAATCTATCAAATATGTCAATTTCGCCGATGCAGCCTTTGGGGAGAAGG CATCCAAGCTAATGATGGGTTGCTGTGTGATAGTGTTGAAAGATGATAAAGTAGCTTCGGATTCAGTGAAGGTAGATGCATCATCGATTGCCATAGGCTG CTGGAAAGGCAGGGGTAGTATGAGTGTGATGGTGACGGCCATCGATTGTCAGGAATTACTGGAAAGGCTTGCAGTTCGGATGGGTGACAAGAGCATTGCA GCAACAGCGGTCGATGTCCCGGCCCTGGGTGTAAATGGAGATGGGCAAGAAGAGATATTTGATGAGGCAACAGAATTTGCAGCAGCATAA
AA sequence Show only first row Show all	>Lus10020217 pacid=23142008 polypeptide=Lus10020217 locus=Lus10020217.g ID=Lus10020217.BGIv1.0 annot-version=v1.0 MGGRGRGNRSRTQRKHFRDGRENVWKRSKSDPSGDTDGAATAVAAEKRSWQPFATQNAAFDDYYKEQGIVSTEEWDTFMEVLRSPLPAAFRINSSSQFST DIRLQLENDFMKTLRAEGADGVEVEVVKPLPWYPDNLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVRPEHFILDMCAAPG SKTFQLLEIIYQSTKPGLLPDGMIIANDLDVQRCNLLIHQTKRMCTANLIVTNNEAQQLPGCRLSKVLPKHERNMGQLLFDRVLCDVPCSGDGTLRKAPD LWRKWSSGMGNGLHNLQIQIAMRGLALLKVGGKMVYSTCSMNPVENEAVVAEILRKCGGSVELLDVSNERPDLVRRPGLRKWKVRDKGNWLASHKDVSKH RHFGVVPSMFPSGRTYVAPSDNDTKNENCGNSEDALTPNDGFDEEASDLPLERCMRIVPHDQNSGAFFIAVLQKVSPLPAIPENPKKQKNSSTKKDATQE KMSDTAVEEDIDAQELKSENDVMEMAASEAVSDIDLADNEEDTVLVEAEAGPRDVSSENGLEEDVLLPVAVDEKVDTEKVVGKRKLQIQGRWKGVDPVLF FNDEATMNSIIDFYGIDESFPFKGHLISRNVDKNHVKRIYYVSKSVKEVLELNFFVGQQLKIASVGLKMFERQTSREGTTTPCCFRISSEGLPLILPHIT KQILYASTVDFVNLLKNKSIKYVNFADAAFGEKASKLMMGCCVIVLKDDKVASDSVKVDASSIAIGCWKGRGSMSVMVTAIDCQELLERLAVRMGDKSIA ATAVDVPALGVNGDGQEEIFDEATEFAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	0	1
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	1.0	0.9701
AT3G55160			unknown protein		Lus10015366 [exp]	2.0	0.9663
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	3.5	0.9557
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	3.7	0.9527
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	3.9	0.9637
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	3.9	0.9562
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10024199 [exp]	4.0	0.9514
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	4.9	0.9567
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034720 [exp]	6.2	0.9179
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	8.8	0.9449

Compare expression of checked genes

Lus10020217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.