Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16380 154 / 8e-48 Protein of unknown function, DUF538 (.1) AT3G07470 146 / 6e-45 Protein of unknown function, DUF538 (.1) AT3G07460 136 / 4e-41 Protein of unknown function, DUF538 (.1.2) AT1G61667 116 / 2e-33 Protein of unknown function, DUF538 (.1) AT5G54530 103 / 1e-28 Protein of unknown function, DUF538 (.1) AT5G19860 91 / 3e-23 Protein of unknown function, DUF538 (.1) AT1G55265 79 / 6e-19 Protein of unknown function, DUF538 (.1) AT4G02360 72 / 4e-16 Protein of unknown function, DUF538 (.1) AT4G02370 67 / 3e-14 Protein of unknown function, DUF538 (.1) AT1G02816 67 / 4e-14 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026841 [exp] 271 / 1e-93 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 157 / 7e-49 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 147 / 1e-44 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 144 / 6e-44 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10029538 [exp] 142 / 3e-43 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 142 / 8e-43 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 138 / 6e-42 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10020075 [exp] 112 / 1e-31 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 111 / 2e-31 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 157 / 2e-49 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 155 / 1e-48 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 100 / 3e-27 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 99 / 1e-26 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 99 / 1e-26 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 98 / 3e-26 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 92 / 6e-24 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 91 / 2e-23 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 88 / 2e-22 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 79 / 8e-19 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10020218 pacid=23141995 polypeptide=Lus10020218 locus=Lus10020218.g ID=Lus10020218.BGIv1.0 annot-version=v1.0 ATGGCCACCCTGCGAAACCCCACCATTTCCCAATTCTCATTTCTCAGCCTCCTCCTCCTCCTATCTTCCCTTCCGATACCAATCTCCGGGGCTTCCGAAT TCACCGTCTACGACTACCTTCATCAAAACGGCCTTCCGATCGGCCTCTTCCCCGAAGGCATAACCAACTTCTCCGTCGACCCAACCACGGGACGCTTCCA GATAAACCTCACCCAGCCTTGCAACGTGAAGCTGCAGAATCAGCTTCACTACGATTTCAACATCTCCGGCCTATTATCCTTTGGCCGCATCGAGGAGATC TCCGGGATGTCCCAGCAGGAGCTGTTCCTTTGGTTCCCCGTGAAGGGGATTAGGGTTGATGACCCTGCGTCTGGGTTGATTCAATTTGATGTCGGGGTGG TGGATAAACAATTCACCTTGTCCACGTTTGAGATCCCTTCCCCTTGTACCGACGGCGATTACTCTTCTCCTTCTTCCATTTCCTATCGGTTTCAGGTTTC GCCATCTCCACCATCTCTTACTTATTAG
AA sequence Show only first row Show all	>Lus10020218 pacid=23141995 polypeptide=Lus10020218 locus=Lus10020218.g ID=Lus10020218.BGIv1.0 annot-version=v1.0 MATLRNPTISQFSFLSLLLLLSSLPIPISGASEFTVYDYLHQNGLPIGLFPEGITNFSVDPTTGRFQINLTQPCNVKLQNQLHYDFNISGLLSFGRIEEI SGMSQQELFLWFPVKGIRVDDPASGLIQFDVGVVDKQFTLSTFEIPSPCTDGDYSSPSSISYRFQVSPSPPSLTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16380			Protein of unknown function, D...		Lus10020218 [exp]	0	1
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10016535 [exp]	3.5	0.6852
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	6.2	0.7570
					Lus10040145 [exp]	17.6	0.7386
AT1G71950			Proteinase inhibitor, propepti...		Lus10025848 [exp]	38.4	0.7159
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10001479 [exp]	42.3	0.6852
AT3G19660			unknown protein		Lus10033765 [exp]	45.4	0.6983
AT5G16380			Protein of unknown function, D...		Lus10026841 [exp]	55.5	0.6441
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	58.4	0.6693
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	62.8	0.6749
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	62.8	0.6217

Compare expression of checked genes

Lus10020218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.