Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47840 178 / 2e-56 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) AT5G55710 99 / 2e-25 AtTic20-V translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026842 [exp] 305 / 6e-106 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) Lus10031203 [exp] 110 / 4e-30 AT5G55710 263 / 3e-90 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Lus10031781 [exp] 108 / 5e-29 AT5G55710 267 / 1e-91 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084900 [exp] 194 / 9e-63 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) Potri.004G191700 [exp] 114 / 2e-31 AT5G55710 228 / 2e-76 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020219 pacid=23142065 polypeptide=Lus10020219 locus=Lus10020219.g ID=Lus10020219.BGIv1.0 annot-version=v1.0 ATGGCGGCCACTTCGTCCCTGCTCCTCCGATTCTCCCCATCCTCATCGTCTAAAACCCTAATTCCATTTCCAAAACCCGCCCATCACTCCTCCTCCACAT CCTTCTCCCCTATTCTCCCATCCTCCCCTGGCGGCTTCCTCCCCAATCTCTGTCTCTCTCAACGAAGGCCAATCACCGTCGCCGCCCGCCTCTCCGGCAA CAACAACAACGCCACCACTCCCGCCACCGACCGGTTAATCTCCGCCCTAGCCTACACTCTACCATTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTC GCCCAATTCCCTTCAATCTCGGCTGTCGTCTTCGAGCCCATCCTCCCTTTGCTCTCCCTCTACCGCTCACTTCCATACGCGAGCTTCGTGGCCTTCTTCG GCATCTACCTTGGGATTGTGAGGAACAGCTATTTCAGCGACTATGCCAGGTTCAACGCGATGCAGGCGTTGACCCTGGACGTGCTTCTGGTGCTGCCTTT GCTGTTCGGCAGGATTTTCAGCCCCGGCCGGAGCGGGCTGGGTTTGAAGCTGATGATTTGGGGTCACAATGGTGTGTTCTTCTTTACCTGCCTCTGTTTC GCTTATGGGTTGGTGAGCAGTGTTTTGGGGAAAACCCCTTATCTCCCTTTTGTTGCTGATGCTGCCCGTAGGCAAATGTAG
AA sequence Show only first row Show all	>Lus10020219 pacid=23142065 polypeptide=Lus10020219 locus=Lus10020219.g ID=Lus10020219.BGIv1.0 annot-version=v1.0 MAATSSLLLRFSPSSSSKTLIPFPKPAHHSSSTSFSPILPSSPGGFLPNLCLSQRRPITVAARLSGNNNNATTPATDRLISALAYTLPFFNSLQYGRFLF AQFPSISAVVFEPILPLLSLYRSLPYASFVAFFGIYLGIVRNSYFSDYARFNAMQALTLDVLLVLPLLFGRIFSPGRSGLGLKLMIWGHNGVFFFTCLCF AYGLVSSVLGKTPYLPFVADAARRQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10020219 [exp]	0	1
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	1.0	0.9212
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	4.7	0.8630
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	7.5	0.8475
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	13.0	0.8091
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	13.9	0.8252
AT5G49525			unknown protein		Lus10011181 [exp]	14.1	0.8092
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	14.1	0.8285
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	15.5	0.7999
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	16.9	0.8038
AT2G02590			unknown protein		Lus10013278 [exp]	18.0	0.8071

Compare expression of checked genes

Lus10020219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.