Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43945 331 / 1e-114 unknown protein AT3G59870 327 / 5e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026850 [exp] 490 / 1e-177 AT2G43945 331 / 2e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G084300 [exp] 374 / 8e-132 AT2G43945 381 / 2e-134 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020220 pacid=23142014 polypeptide=Lus10020220 locus=Lus10020220.g ID=Lus10020220.BGIv1.0 annot-version=v1.0 ATGTCTGCTGTCACTGGGTTAGTCACCATGAAGCTCTTGTTAACTACCTCCGCCTCCCCCAACTCTGCTTCTCTTTTCTCTGCTTCTTCTTCTGCATCCT TGGATTTTCCCTCCAAATCCCTCCGCACGCCAAACCCTAATTTCGTCTATTCAGCTTCGCCCCGGAGGACCCATCCCTTTCTCAAACCAACGTGGCTTTG TGGAAACAAGAGAAGAGACCAAGATAATGATGCTTTCGAAGCTGAAGAGGACGATGTGGTTTGCAAGTTTGGTTCTGATGAAGAAAGTCCCATCCGGATT CCTTCCACTCTGGTGATGTCAGAACAACCTAAACCTGTTTCAGATGTAGACTATCTACAGGAGCTGTTGGCCATTCAACAACAAGGGCCTAGATCTATCG GCTTCTTTGGAACGCGGAATATGGGCTTCTTGCATCAGGAACTCATTGAGATTCTTAGTTACGCTCTAGTGATAACAAAGAACCATATATACACCTCAGG TGCATCTGGCACTAATGCTGCTGTTATCAGAGGAGCATTAAGAGCGGAGAAGCCAGAGTTGCTTACAGTGATCTTGCCACAGAGTTTGAAAAAGCAACCT CCCGAAAGTCAGGAATTGCTCGAAAAAGTGAAGAACGTGATAGAAAAGCCTTACAATGATCATCTGTCGTTGATCGAAGCCAGCAGGCTGTGCAACATGG ACATAATATCACAAGTACAGCAAGTGATTTGCTTTGCATTTCATGATAGTAGACTGCTAATGGAAACATGTGAAGAGGCCAAAAGTCTCAGGAAAATTGT GACGCTGTTCTATCTGGACTGA
AA sequence Show only first row Show all	>Lus10020220 pacid=23142014 polypeptide=Lus10020220 locus=Lus10020220.g ID=Lus10020220.BGIv1.0 annot-version=v1.0 MSAVTGLVTMKLLLTTSASPNSASLFSASSSASLDFPSKSLRTPNPNFVYSASPRRTHPFLKPTWLCGNKRRDQDNDAFEAEEDDVVCKFGSDEESPIRI PSTLVMSEQPKPVSDVDYLQELLAIQQQGPRSIGFFGTRNMGFLHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQP PESQELLEKVKNVIEKPYNDHLSLIEASRLCNMDIISQVQQVICFAFHDSRLLMETCEEAKSLRKIVTLFYLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43945			unknown protein		Lus10020220 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	9.9	0.8229
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	15.7	0.8472
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	18.1	0.8432
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	23.6	0.8308
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	26.2	0.8257
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	27.7	0.8417
AT5G16030			unknown protein		Lus10033537 [exp]	31.9	0.8253
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	34.1	0.8344
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	36.9	0.8296
AT2G04360			unknown protein		Lus10000124 [exp]	41.3	0.7790

Compare expression of checked genes

Lus10020220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.