Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08450 555 / 0 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT1G56340 445 / 4e-154 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 444 / 2e-153 AtCRT1b calreticulin 1b (.1) AT5G61790 204 / 1e-59 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 179 / 8e-50 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026849 [exp] 723 / 0 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10010924 [exp] 464 / 1e-159 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 448 / 9e-155 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 444 / 3e-152 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 446 / 6e-152 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10043021 [exp] 193 / 4e-55 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 192 / 2e-54 AT5G61790 794 / 0.0 calnexin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055200 [exp] 605 / 0 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 590 / 0 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 570 / 0 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.005G015100 [exp] 440 / 3e-152 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.013G009500 [exp] 435 / 4e-150 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.015G109200 [exp] 187 / 4e-53 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 179 / 4e-50 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 143 / 4e-37 AT5G61790 582 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Lus10020222 pacid=23142052 polypeptide=Lus10020222 locus=Lus10020222.g ID=Lus10020222.BGIv1.0 annot-version=v1.0 ATGGCGGAAGATTACCTTAACGCCAATCACTATCGTTTGCTTACTTTTCAGCTGCTTCTTCTCTTCCTTTGCTCGGCTCTCCAGCTCTCAGCATCAGAGA TCATCTTTGAAGAACGATTCGACGATGGTTGGCAGAGTAGATGGGTGAGATCGGATTGGAAACGAAGTGACGGCAAAGCTGGAACGTTCAAACACACCGC TGGAAAGTGGCACGGCGATCCAGATGACAAGGGCAAGTGGATCCAGACTACCACTGATGCTAGGCATTTTGCCATATCTGCCAAGATACCTGAATTCAAC AACAGTGGCAGAACCTTGGTCCTCCAGTACTCGATAAGGCTGGAGCAGGACATCGAGTGCGGCGGTGGATACATTAAGCTTCTCTCTGGATATGTAAATC AGAAGAAGTTTGGTGGAGATACTCCTTATAGTGTGATGTTTGGTCCAGACATATGCGGCACACAAAAAAAGCAGCTCCATCTTATAGTCTCTTACCAAGG ACAGAATTATCCCATCAAGAAGGAGCTGGAGTGTGAAACCGACAAACTGACACATTTCTACACATTTATTATGAGGCCGGATGCTTCTTATAGCATCCTA ATTGATGGCCGAGAAAAGGATTCTGGAAGCTTGTACACAGATTGGGATATTCTACCTCCGCGGAAAATTAGAGATGTCAAGGCCAAGAAGCCTGCTGACT GGGACGATAGAGAGTATATTGATGATCCTAATGCTATCAAACCTAAGGGATATGATTCTATTCCAAAAGAGATTTCTGACCCAAATGTTAAAGAGCCTGA CGATTGGGATGAAGAAGAGAATGGCATCTGGAGACCACCAAGGATACCGAATCCAGCTTATAAAGGGCCATGGAGACCCAAGAGAATCAAGAACCCGAAT TATAAAGGAAAGTGGAAGATTCCTTACATTGATAACCCAGAGTTTGAAGATGACCCAGATATTTATGTGCTCAAACCAATCAAATATGTCGGGATTGAAG TTTGGCAGGTGAAGGCAGGCTCAGTGTTCGACAATGTTTTGATATGTGATGATCCTGAGTATGCAAAAGAAGTGGTACAAGAGATATTGTCCAACAGGGA GATTGAGAAGGATGCTTTTGAGGAGGCAGAGAAAATTAGGAGAGCTCGGGAAGAAGAGGAAGCTCAAAGAGCTCGAGAAGAAGGTGAAAGAAGAAGAAAA GAACGGGGGTATGACAGAAGCCACCGCGACAGATACAAGGACAAATACCGGAAGCGCCGTGATCGCTGGGATGATTATCATAGTGAAACTGAGTCTTCCA CTGTTGTCATCTTCACATCTGATTTCGTGTTGCCGGCCGAAACAACCGGCCGGCCGGGGCTGCCTCCTGTCGAAATCTACGACCGGGCGAGATGGTTTTC GGCCGATTTTTCGATGCAGCCCGATAAAATTCGCGAGTTGCAAGGAGACATGTACCGTGAGAGTGGTTTTCGAATGAGAAAATTTGGATAG
AA sequence Show only first row Show all	>Lus10020222 pacid=23142052 polypeptide=Lus10020222 locus=Lus10020222.g ID=Lus10020222.BGIv1.0 annot-version=v1.0 MAEDYLNANHYRLLTFQLLLLFLCSALQLSASEIIFEERFDDGWQSRWVRSDWKRSDGKAGTFKHTAGKWHGDPDDKGKWIQTTTDARHFAISAKIPEFN NSGRTLVLQYSIRLEQDIECGGGYIKLLSGYVNQKKFGGDTPYSVMFGPDICGTQKKQLHLIVSYQGQNYPIKKELECETDKLTHFYTFIMRPDASYSIL IDGREKDSGSLYTDWDILPPRKIRDVKAKKPADWDDREYIDDPNAIKPKGYDSIPKEISDPNVKEPDDWDEEENGIWRPPRIPNPAYKGPWRPKRIKNPN YKGKWKIPYIDNPEFEDDPDIYVLKPIKYVGIEVWQVKAGSVFDNVLICDDPEYAKEVVQEILSNREIEKDAFEEAEKIRRAREEEEAQRAREEGERRRK ERGYDRSHRDRYKDKYRKRRDRWDDYHSETESSTVVIFTSDFVLPAETTGRPGLPPVEIYDRARWFSADFSMQPDKIRELQGDMYRESGFRMRKFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	0	1
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10033445 [exp]	5.9	0.6811
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10012231 [exp]	9.3	0.6795
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	16.3	0.6745
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	16.9	0.6786
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	18.1	0.6644
AT4G08330			unknown protein		Lus10018170 [exp]	18.6	0.6411
AT1G77400			unknown protein		Lus10042737 [exp]	21.5	0.6360
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	22.1	0.6810
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	22.6	0.6220
AT4G04955		ATALN	allantoinase (.1)		Lus10025648 [exp]	23.5	0.6582

Compare expression of checked genes

Lus10020222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.