Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10110 222 / 6e-75 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 209 / 1e-70 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G55510 55 / 1e-09 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT4G26670 54 / 2e-09 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT2G37410 40 / 0.0004 ATTIM17-2 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026848 [exp] 265 / 7e-92 AT3G10110 224 / 5e-76 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10043170 [exp] 56 / 1e-09 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032577 [exp] 56 / 1e-09 AT4G26670 221 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281200 [exp] 229 / 1e-77 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 227 / 8e-77 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 56 / 7e-10 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 55 / 2e-09 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10020223 pacid=23141980 polypeptide=Lus10020223 locus=Lus10020223.g ID=Lus10020223.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGCGGCGAATCGAACAACAGCAGCGGATCTCAAAGCACAGAAACCAAGATCGAGCCGTTCAGGATGCCCTCGGTGGAGGAGATCAGAGCGC AGGAAGTGTGGAACAACTGCGCGATAAGGAGCGCCTTCAGCGGCGTCATCGGCGGAGGGCTGGGGATCTTCATGGGGTTCCTCCTGGGAGCGCTGGACAA TCCGTTGATGCACGATCCGGACATGAGCGCCAAACAGCAAATCGTGTTCACAGCGAAGCAGATGGGACGCCGGAGTTGGAGTAACTGCAAGGCCTTCGCG GTGATGGGGCTGGTGTTCTCCGCCGCCGAGTGCGTGGTGGAGAAGGCCCGTGCCAAACACGATGTCACTAATTCGGCGATCGCCGGGTGCATCACCGGTG GCACCATGTCTGCAAAAGGTGGGCCGAAAGCAGCTTGTGTTGGCTGTGCGGGATTCTCAGCGTTCTCAGTATTGATCGAGAAGTTCTTAGATAGGCATAC TTGA
AA sequence Show only first row Show all	>Lus10020223 pacid=23141980 polypeptide=Lus10020223 locus=Lus10020223.g ID=Lus10020223.BGIv1.0 annot-version=v1.0 MAESGESNNSSGSQSTETKIEPFRMPSVEEIRAQEVWNNCAIRSAFSGVIGGGLGIFMGFLLGALDNPLMHDPDMSAKQQIVFTAKQMGRRSWSNCKAFA VMGLVFSAAECVVEKARAKHDVTNSAIAGCITGGTMSAKGGPKAACVGCAGFSAFSVLIEKFLDRHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	0	1
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	1.0	0.9126
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	4.2	0.8033
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	6.2	0.7409
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	9.7	0.8113
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	9.9	0.7898
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	10.4	0.7952
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10009299 [exp]	14.5	0.7795
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	17.1	0.7910
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	17.3	0.7785
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	17.4	0.7447

Compare expression of checked genes

Lus10020223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.