Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65270 310 / 5e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026847 [exp] 410 / 8e-145 AT1G65270 362 / 2e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055100 [exp] 321 / 3e-110 AT1G65270 356 / 4e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020224 pacid=23141990 polypeptide=Lus10020224 locus=Lus10020224.g ID=Lus10020224.BGIv1.0 annot-version=v1.0 ATGACGACGAGGAACGTACTGTTTCTATTCTTGTTTACTCTCGTCCACCTACTCTCTCTCTTTGCTCCTTCCCATTCCGGTTTTCACTCCGACGAGCTTC TCCTGGACGATGACGAGTTAGCCCTCGATCCCCCCCATCCTCTACCTCAGTCTTCGATTCCCAAACCAGATCACACTTCCACTCCCTCTCCAACTCCTCG TAGGAAGTCCTCTGATTCCGATTCCGACTCCAAGATCCAATTCACCCTTGAACATGCCTTTGGTGACTCCGATTTTGTTCCCGCCGGCACCTTCTCCGCT CGCCTCAAAACATCTGCTCATGGCAGCCAGACACTCACAAAGCTGAGATTCTCGAGGAATGCTTTGACGGATGCTGAGAAAGAGAACTTTAAGAACCTGC TGGAGGTTGATGATTTCTACAAGATAAGGCTGCCCTCTAATGTCTTAAGTCCTCCTGGCAAGGATTTTGTTGTCTCCTCTGTGAAAGCAAGATGTCTTCC GAGAGAGACTTTGGATGAGCACTTTGTGATACAAACGGAAGGTGTGAACATCTTGGCTGTTAACTATGGTGCCCCTGGAGCATGTTCCTATCCTCGACAA ATGAAACTTCCATCAAAGTGGTTATTCAACTCATATACAGTTCTGAAGAATACTGAGCAGGCACCAAGGACGCCAGTTTTCATTCAGGATGTGTTGGGCG GGGAAGAGGGGGGAGGTGAAGCGGCACAACTTCCGGAAAGGTCCTGGTGGGCTAAATACTGGATGTATTTGATACCTCTGGGGCTGATAGTGATGAATGC GATGACCCAAGCAATGAATATGCCTGAGGAGCAAGCTGCCGGGCAGCCCGGTGGATCACAGGCTGCACCTGCAGGAGCTGTGGCTCGCGGTCCCAGTTCT GCTGCTAGGAGAAGATGA
AA sequence Show only first row Show all	>Lus10020224 pacid=23141990 polypeptide=Lus10020224 locus=Lus10020224.g ID=Lus10020224.BGIv1.0 annot-version=v1.0 MTTRNVLFLFLFTLVHLLSLFAPSHSGFHSDELLLDDDELALDPPHPLPQSSIPKPDHTSTPSPTPRRKSSDSDSDSKIQFTLEHAFGDSDFVPAGTFSA RLKTSAHGSQTLTKLRFSRNALTDAEKENFKNLLEVDDFYKIRLPSNVLSPPGKDFVVSSVKARCLPRETLDEHFVIQTEGVNILAVNYGAPGACSYPRQ MKLPSKWLFNSYTVLKNTEQAPRTPVFIQDVLGGEEGGGEAAQLPERSWWAKYWMYLIPLGLIVMNAMTQAMNMPEEQAAGQPGGSQAAPAGAVARGPSS AARRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65270			unknown protein		Lus10020224 [exp]	0	1
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	1.4	0.8727
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	1.4	0.8599
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	3.5	0.8417
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	3.7	0.8208
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	7.7	0.8004
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	12.2	0.8436
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	13.2	0.8261
AT2G19270			unknown protein		Lus10015539 [exp]	15.9	0.8019
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	16.8	0.8256
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	17.3	0.7762

Compare expression of checked genes

Lus10020224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.