Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03310 478 / 5e-164 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) AT5G17440 442 / 2e-150 LUC7 related protein (.1) AT3G03340 435 / 9e-148 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1) AT4G19860 363 / 1e-117 alpha/beta-Hydrolases superfamily protein (.1) AT5G51410 78 / 2e-15 LUC7 N_terminus domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026853 [exp] 605 / 0 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10026846 [exp] 521 / 7e-180 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10017142 [exp] 353 / 6e-114 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 351 / 5e-113 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027212 [exp] 75 / 3e-14 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 71 / 5e-13 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 68 / 7e-12 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031732 [exp] 64 / 1e-10 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076300 [exp] 518 / 2e-179 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.013G084800 [exp] 479 / 8e-165 AT5G17440 473 / 2e-166 LUC7 related protein (.1) Potri.019G055000 [exp] 461 / 1e-157 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.015G121000 [exp] 362 / 1e-117 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 353 / 5e-114 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G109000 [exp] 66 / 3e-11 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.001G124300 [exp] 65 / 5e-11 AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.014G014400 [exp] 45 / 0.0002 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase CL0028 [flax] [poplar] PF03194 [flax] [poplar] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Lus10020225 pacid=23142063 polypeptide=Lus10020225 locus=Lus10020225.g ID=Lus10020225.BGIv1.0 annot-version=v1.0 ATGGATGCGATGAGGAAACAGCTCGATGTGCTCATGGGAGCCAATCGCAACGGTGACGTCAGGGAGGTCAATCGCAAGTACTTCGATCGTGATGTTTGCC GCATGTACTTGGTCGGCCTGTGTCCTCACGAGCTATTCCAGTTGACGAAAATGGATATGGGTCCTTGCCCAAAAGTCCACTCGTTGCAGCTGAGGAAAGA ATATGAAGAAGCTAGGGCAAAGGGTGTTGATAACTACGACCGAGAACTGGAAGATGTAATTGATAGACTCATAGTCGAGTGTGACAAGAAGATTGGTAGA GCACTCAAACGTCTTGATGATGAAGATGATGCAAAGGCTGCCATTGCAATATCTGTTTCTGAGGTTACTCAGACTCCAGAGGTGATTGAGTTATCTAGAC AGATCAGGGAAAAACTGAAAGAAGCTGATAAACATGATCTTGAAGGCAAGACAGACTCCAAGATCCAAACTCTTGAAGAGGTCGAAAAACTCAGAGGTGA AAGAGCAGAGAAGCAGTCTGCACTTCTTCTGGAAGCTTTTAATAAAGATAGGGCATCATTACCCCAGCCCCTGCCAAATCCACCTCCACTGGCAGCAATG CCTGTTGCAGCTCCGGATCCACGTACACAAGAAATGATAAACGAAAAGCTGAAGAAAGCAGAGGATCTTGGTGAGAAAGGGATGGTAGATGAAGCCCAAA AAGCCTTGGAAGAGGCTGAAGCACTCAAGAAGCTGCCTGCCAGGCAGGACCCAACAGTCGATAACTCCAAGTATACAGCTGCAGATGTTCGCATTACCGA TCAGAAGCTCCGTGTTTGTGACATTTGTGGAGCATTTTTGAGCGTGTATGATAGTGACCGACGGTTAGCTGATCATTTTGGAGGAAAGCTACATCTTGGC TATATACAAATTCGTGAAAAGATTGCTGAGCTTCAGGTTGTTAAATGTGTTCACTTGACAGAAGTATATAATTTCCATGATATGATTGAAATGCTGGTTG ACTGTGGACATAATAAGGGCACCACGTTGTTTGGGTACGGTTATGATTTCAAACAAAGTAACAGAATTGGCAACTCAATGGAGACTGCTTATAAGGCTTC TGGAAATAGGAGAGTGAACATAATTACGCATTCAATGGGCGGACTGCTGGTGTCATGTTTCATGTCACTATACAAAGATGTCTTCTCAAAGTTCGTCAAT AAGTGGATCTGCATTGCATGCCCTTTCCAAGGTGCTCCTGGGTGCATTAATGATTCTTTATTAACCGGCTTACAGTTTGTTGAAGGCTTTGAGAACTATT TTTTTGTATCAAGATGGACTATGCACCAACTGTTGGTGGAGTGCCCATCAATTTATGAGATGTTGCCTAACCCTGCATTTAAGTGGGCAAAAGAACCTCA AATTCAAGTATGGCGGAAGAAATCAGATGACGATGGAACTTCTACTCATGGAGAGTCCTATGGAACGCTTGAGAGTATAAGTTTATTTGAAGAAGCATTG AAGAATAATGAGGCAAGTGTCCATAACTCTACTATGATTTCATCATTTACATTGCTTCTACAAGTTCGTAAAGTTCGATGCGGACTGGTTTTGTTTCAGC TAAGCTATGGTGGAAATACAATTGCTCTACCATTCAACATGGATATCCTTAAATGGGCTACTGAAACCCGGCAGATGCTCAACGATGCTGAATTACCAGA AGGGGTTTCCTTCTACAACATTTACGGGACATCGCTCGATACGCCTTTTGACGTATGCTATGGTTCAGAGAGTTCCCCGGTAGATGACTTATCTGAAGTC TGTCACACAATGCCCGAGTACAGTTTTGTGGATGGTGATGGAACTGTTCCTGTCGAATCAGCCAAGGCAGATGGATATGCAGCAACCGAGAGGATCGGAA TTGCAGGTGAACACCGTGGAATACTAAGGGACGACAAGGTATTCAAACTCATCAAGAAATGGTTAGGAGTTGAAGAGAGTGAAAGCAAGCCATTAACAAG AGCTAAAGTTAGGGATTATGCTTCTCAGGATTCTCGTGTTTTCGTTTGA
AA sequence Show only first row Show all	>Lus10020225 pacid=23142063 polypeptide=Lus10020225 locus=Lus10020225.g ID=Lus10020225.BGIv1.0 annot-version=v1.0 MDAMRKQLDVLMGANRNGDVREVNRKYFDRDVCRMYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEARAKGVDNYDRELEDVIDRLIVECDKKIGR ALKRLDDEDDAKAAIAISVSEVTQTPEVIELSRQIREKLKEADKHDLEGKTDSKIQTLEEVEKLRGERAEKQSALLLEAFNKDRASLPQPLPNPPPLAAM PVAAPDPRTQEMINEKLKKAEDLGEKGMVDEAQKALEEAEALKKLPARQDPTVDNSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG YIQIREKIAELQVVKCVHLTEVYNFHDMIEMLVDCGHNKGTTLFGYGYDFKQSNRIGNSMETAYKASGNRRVNIITHSMGGLLVSCFMSLYKDVFSKFVN KWICIACPFQGAPGCINDSLLTGLQFVEGFENYFFVSRWTMHQLLVECPSIYEMLPNPAFKWAKEPQIQVWRKKSDDDGTSTHGESYGTLESISLFEEAL KNNEASVHNSTMISSFTLLLQVRKVRCGLVLFQLSYGGNTIALPFNMDILKWATETRQMLNDAELPEGVSFYNIYGTSLDTPFDVCYGSESSPVDDLSEV CHTMPEYSFVDGDGTVPVESAKADGYAATERIGIAGEHRGILRDDKVFKLIKKWLGVEESESKPLTRAKVRDYASQDSRVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	0	1
AT1G69070			unknown protein		Lus10036815 [exp]	4.1	0.9191
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	5.5	0.9002
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	6.5	0.9128
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	7.3	0.9116
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10037653 [exp]	7.6	0.8758
AT3G13670			Protein kinase family protein ...		Lus10026214 [exp]	10.1	0.8622
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	14.1	0.9012
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10019535 [exp]	14.7	0.8918
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	16.5	0.8873
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	21.7	0.8648

Compare expression of checked genes

Lus10020225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.