Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59470 105 / 3e-27 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) AT3G07500 89 / 2e-21 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT4G12850 84 / 8e-20 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT2G43280 74 / 9e-16 FAR1_related Far-red impaired responsive (FAR1) family protein (.1) AT5G18960 68 / 6e-13 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 62 / 5e-11 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT4G38180 60 / 5e-10 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G19990 47 / 8e-06 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 43 / 0.0001 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026854 [exp] 384 / 2e-135 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076800 [exp] 161 / 1e-48 AT3G59470 156 / 1e-46 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.007G129500 [exp] 113 / 3e-30 AT3G59470 260 / 9e-88 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.017G029100 [exp] 108 / 2e-28 AT3G59470 323 / 1e-112 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Potri.014G176500 [exp] 102 / 1e-26 AT3G07500 275 / 2e-94 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128900 [exp] 89 / 4e-21 AT3G07500 154 / 2e-46 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239400 [exp] 88 / 4e-21 AT4G12850 207 / 1e-68 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.014G176600 [exp] 84 / 9e-20 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.017G029400 [exp] 84 / 2e-19 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128700 [exp] 76 / 4e-16 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1) Potri.002G239300 [exp] 75 / 6e-16 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03101 [flax] [poplar] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020226 pacid=23142017 polypeptide=Lus10020226 locus=Lus10020226.g ID=Lus10020226.BGIv1.0 annot-version=v1.0 ATGGATTCAGATGGTGGTGGTGGCAGCGACGGGAATCCAGATCCGATTTCAGGTGACGACGGGGCAGCTTCGGCGCCGGACTTGAACCGTAATGAATCAT CTTCGAATCGCGAGAAAGAAATCGCAGTAGTTGACCCGGACGAGCCGTACGTGGGCCGGGAATTCGACTCAGAAGCGGAATCCGTGGCGTTTTACACGGC GTATGCGCAGCGTAATGGTTTCGGCGTACGGGTGAGGGATCATTCCCGGGGTCGCGAGGGATTTGTGGTGGCGAGAACAATAGTGTGCAACAAAGAGGGA TTCAAGAAGGGGAAGGAGAAGGCGAAGGTGAATAATATTACATATCTGAAGAAGAAGAATAATAAGTTGAAGACGGCTGCCCTGCCTCTGCCTGCTGCTG CTCCGTTTAGGATGGGATGCAATGCAAAAGTGGCATTCAAGAGGCTGGAAACTGGCAAGTGGACTGTGAAAAGATTTATCAAAGAGCACAATCATCCACT CTATGTGCAAGAACTGTTTTCATGCCCCAGGGTCTTACAAATACCGGCTGACGATAGAATAGTACACCAACTGAACGAAGAGCTGGCGAAGGAGAGAGTG CGATCTGCTTCATTGAGAGAAATGGTACAAGCGCTTCTGAGTCACATTGAGGAGCATACACAAGGGCTATCCCAAAAGGTGGAGTGCATGGTGGAAAAGG TAAACAAGATTGATGATTCTCGAGAGAAAGAGCACATAGCTGAGTACTAG
AA sequence Show only first row Show all	>Lus10020226 pacid=23142017 polypeptide=Lus10020226 locus=Lus10020226.g ID=Lus10020226.BGIv1.0 annot-version=v1.0 MDSDGGGGSDGNPDPISGDDGAASAPDLNRNESSSNREKEIAVVDPDEPYVGREFDSEAESVAFYTAYAQRNGFGVRVRDHSRGREGFVVARTIVCNKEG FKKGKEKAKVNNITYLKKKNNKLKTAALPLPAAAPFRMGCNAKVAFKRLETGKWTVKRFIKEHNHPLYVQELFSCPRVLQIPADDRIVHQLNEELAKERV RSASLREMVQALLSHIEEHTQGLSQKVECMVEKVNKIDDSREKEHIAEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10020226 [exp]	0	1
AT3G13780			SMAD/FHA domain-containing pro...		Lus10015611 [exp]	1.0	0.8822
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	9.8	0.8676
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	11.0	0.8491
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	12.3	0.8496
AT4G00585			unknown protein		Lus10012175 [exp]	16.6	0.8651
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	16.7	0.8397
AT1G20580			Small nuclear ribonucleoprotei...		Lus10016013 [exp]	17.7	0.8443
AT1G16740			Ribosomal protein L20 (.1)		Lus10033326 [exp]	23.0	0.8142
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	25.0	0.8209
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	27.4	0.8212

Compare expression of checked genes

Lus10020226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.