Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17410 239 / 6e-74 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026855 [exp] 492 / 2e-171 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180700 [exp] 256 / 5e-80 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10020227 pacid=23141946 polypeptide=Lus10020227 locus=Lus10020227.g ID=Lus10020227.BGIv1.0 annot-version=v1.0 ATGGACATAGCTCGAGAAGAACTAACAAAAAAGCCTGATGAAATTTCGGTTGAGAAGCTTCAGTCGCTTCTAGACCTTGCTTTGCGTACTACAGCTGCAG CAGCGGATCCTTGCCATGAGGACTTGACGTGTTGTGTTGAAAAGGCTACTTTACGTAAAAGACTGGGTAGCTTGAATCATGCTGCTGTTTTGGTTGCTGA TGATGATCCTGAAGAGCCAACAACTGTTACTGGTCTTGAGACATTCTCCTTAAGTTACAAGACCGACAGCTTTCTGGGTCGTGGCAACTGCATCAAGTAT GTTCCAGAATTTAAGTTTATCTACTATGCTCACTTTCCTGCCTCAATGTGGCAATATTATCTGGCTCTGCTGAATGCTTTTTTCAGGGAGTTCGTGCCCT CAAGATACAGGGAACTGCAATATCCAGATCATCCCTTCTCTGCCGCAGTACTTGAACCGAACTGGCATGTAATGTATAATAGACTTCAGACTGCAAGGAG CATAGACGAGGTTATCCAACATCATGATTTTTTCCTGGACAAGTGTCTAAGAGAGTGTTTGCTCCTGTCACCTCTTCTGCTTAAGAAGGTGGACACACTG AAATCACTGTGCCTACAGTACGCTGCTGCAACTCAGTGGTTGATATCGTCATCTATCGACATCGATGAGTCGAATGCAACACAGCGATCGGAAAGGAGGA AACAAGGGAAGTCTAGCAGCAGACAGTCAGTGCCGCTACGAACCCTGAAACAGAATCCGGCTGTTACAGATTCTATACTGAAATTCGAGAAGGAGTTCAA TTCCGAACTTCAGAGTTTGGGACCGATCTTGAGTAGCAATTCGCAAGCTGAACCATATTTAACTCATCTTGCACAGTGGATCCTCGGAGTCGGAAGCGAT AAATGA
AA sequence Show only first row Show all	>Lus10020227 pacid=23141946 polypeptide=Lus10020227 locus=Lus10020227.g ID=Lus10020227.BGIv1.0 annot-version=v1.0 MDIAREELTKKPDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVEKATLRKRLGSLNHAAVLVADDDPEEPTTVTGLETFSLSYKTDSFLGRGNCIKY VPEFKFIYYAHFPASMWQYYLALLNAFFREFVPSRYRELQYPDHPFSAAVLEPNWHVMYNRLQTARSIDEVIQHHDFFLDKCLRECLLLSPLLLKKVDTL KSLCLQYAAATQWLISSSIDIDESNATQRSERRKQGKSSSRQSVPLRTLKQNPAVTDSILKFEKEFNSELQSLGPILSSNSQAEPYLTHLAQWILGVGSD K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	5.0	0.7035
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	5.2	0.6047
AT3G26750			unknown protein		Lus10021459 [exp]	31.6	0.6126
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	50.1	0.5708
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	53.4	0.5804
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	63.4	0.5211
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	81.7	0.4946
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	127.9	0.5508
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	209.5	0.4998
AT4G04880			adenosine/AMP deaminase family...		Lus10006768 [exp]	255.6	0.4970

Compare expression of checked genes

Lus10020227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.