Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17410 381 / 4e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT5G06680 67 / 2e-12 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT1G80260 44 / 0.0001 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026855 [exp] 461 / 9e-160 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10029296 [exp] 67 / 2e-12 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10016246 [exp] 65 / 2e-11 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180700 [exp] 427 / 1e-146 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.016G059900 [exp] 71 / 1e-13 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.006G194200 [exp] 65 / 1e-11 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.009G153300 [exp] 45 / 3e-05 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10020228 pacid=23142069 polypeptide=Lus10020228 locus=Lus10020228.g ID=Lus10020228.BGIv1.0 annot-version=v1.0 ATGGAAACTGCAACCATGGCCGCATCCATTTCCTGTCCTTCCACTCCTCACTGGAACGTCGAGAGACCCTTCCTCACTGGCCGCTTCCACCAGGAATTTG CACAGAGGTTGTTTCCTTTGTGTAAGAGCTACCTGCTGATTGACCAGTTCGTGGAGTCAAGGTCACAGTTCAAGAATGGCTTGGTTAATCATGCATTTGC TGCTGCACTCAGGAATTTTCTTCTAGATTACCAGGCCATGGTAGCACAGCTGGAGCATCAGTTTCGACTAGGAAGGCTTTCCATTCAAGGACTTTGGTTT TACTCTCAGCCTTTGATGTCTCCCATGCAAGCATTGTCCATTGTGGTTCAGAAGGCTTCCGCAAATAACTTCGCAAAAGCCATGGCTGGTGATAATGCAG TGAGGTCATTGTTAGAGAAGATGACAGAATGTGCAAGTAATGCATATCTTGGAATATTAGAGAGGTGGGTGTACGAAGGAGTGATAGAAGATCCTTATGG TGAATTTTTTATTGCTGAGAACAAATCTCTTCATAAGGAGAGCCTCACTCAGGATTATGATGCTAAGTATTGGCGGAAACGTTACAGCCTGAAGGAAGGG ATTCCCAGCTTCCTTGCAAATATCTCTGGGATAATTTTGACAACTGGAAAGTACTTAAATGTTATGAGAGAATGTGGACACAATGTTCAGGTTCCTGCCT CAGAAAATTCTAAGCTAACCAGCTTCGGCTCAGACCATCACTATCTTGATTGCGTAAAAGCTGCATATGAGTTTGCAGGCAATGAGCTCTTGAATCTCAT TAAAGAAAGGGTAACTGCTAATTAA
AA sequence Show only first row Show all	>Lus10020228 pacid=23142069 polypeptide=Lus10020228 locus=Lus10020228.g ID=Lus10020228.BGIv1.0 annot-version=v1.0 METATMAASISCPSTPHWNVERPFLTGRFHQEFAQRLFPLCKSYLLIDQFVESRSQFKNGLVNHAFAAALRNFLLDYQAMVAQLEHQFRLGRLSIQGLWF YSQPLMSPMQALSIVVQKASANNFAKAMAGDNAVRSLLEKMTECASNAYLGILERWVYEGVIEDPYGEFFIAENKSLHKESLTQDYDAKYWRKRYSLKEG IPSFLANISGIILTTGKYLNVMRECGHNVQVPASENSKLTSFGSDHHYLDCVKAAYEFAGNELLNLIKERVTAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020228 [exp]	0	1
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	6.0	0.9060
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	7.5	0.8996
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	15.4	0.8959
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	17.9	0.8950
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	19.2	0.8952
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	19.7	0.8928
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	22.0	0.8833
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	32.5	0.8714
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	35.0	0.8877
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	37.5	0.8919

Compare expression of checked genes

Lus10020228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.