Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65430 791 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT1G05890 715 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31510 562 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT2G31780 404 / 3e-135 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT2G31770 404 / 8e-134 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 385 / 6e-127 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G05880 216 / 1e-62 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT4G34370 200 / 8e-56 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT3G27710 192 / 1e-53 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 189 / 5e-52 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026856 [exp] 727 / 0 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10025566 [exp] 707 / 0 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 704 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10013371 [exp] 317 / 9e-101 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10040508 [exp] 191 / 9e-53 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 178 / 9e-48 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 175 / 6e-47 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 158 / 4e-41 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10000131 [exp] 144 / 2e-39 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126900 [exp] 782 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.017G032000 [exp] 769 / 0 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.010G180600 [exp] 660 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.008G077100 [exp] 649 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 496 / 5e-169 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 384 / 4e-126 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 177 / 8e-48 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 177 / 8e-48 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 73 / 9e-14 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G214201 [exp] 64 / 4e-12 AT1G65430 66 / 9e-14 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10020229 pacid=23141999 polypeptide=Lus10020229 locus=Lus10020229.g ID=Lus10020229.BGIv1.0 annot-version=v1.0 ATGGAATCGGAAGATGAATTCGATATGCAAGACGCTGCCGAATCGGCCGAAGACGATTTTTACAGCGGTGGAGATGATGGGTTCGATTCCGACGACGCCG ACGTTGCTGATTACGAGTTTATCAGCAATGATTCCGATGATTCCGATGACCTCATTTCCCATCGCCACCAGCAAAACTATACGATTTTGAGCGAAGCTGA TATTTGCCGCCGTCAGGACGATGATGTGGCCAGAATAGCAACGGTGCTCTCCATTTCTAAGGTTTCTGCCAGCATCCTCCTACGATATTATAACTGGAGT GTTAGTAAAGTGAATGATGCATGGTTTGCTGACGAAGAGAAAGTCCGTAAGGCTGTAGGCTTACTGGAAGAAGCTGCTGTTACATTTCCTGATGGAAAAG AAATGACTTGTGGGATTTGTTTTGAAACCTATCCATGTGACAAGCTGCATGCAGCTGCTTGTGGTCATCCCTTTTGTAGCTCTTGCTGGGCAGGTTATAT TGGTACTTCCATTAACGATGGCCCTGGGTGTTTGATGTTGCGATGCCCTGATCCATCTTGTGCCGCTGCTGTTGGTCAAGATATGATAAATGCATTGGCT GCTAAGGAAGATAAGGAGAAATATAATCGTTACTTCATCAGATCTTACATTGAGGACAACAGGAAGACCAAATGGTGTCCTGCTCCAGGGTGTGATTATG CTGTCGATTTTATTGTCGGCAGTGCTAGCTATGATGTTTCTTGTGGCTGTTCATATAGCTTTTGCTGGAACTGTACTGAGGAAGCTCACAGACCTGTTGA CTGTGGAACTGTAGGCAAGTGGATACTGAAAAACAGTGCTGAATCTGAAAACATGAACTGGATATTAGCTAATTCTAAGCCTTGCCCAAAGTGCAAACGG CCAATTGAGAAGAACCAAGGCTGTATGCACATTACCTGCACTCCTCCTTGTAAATTTGAATTTTGCTGGCTTTGCCTTGGTGCTTGGTCAGAACACGGGG AGAGGACTGGTGGGTTCTATGCATTTAACCGTTATGAAACAGCAAAACAAGAGGGAGCGTATGATGATGCTGAGAAGCGAAGAGTGATGGCAAAAAATTC TCTGGAGAGGTATACCCATTATTACGAACGATGGGCAACTAATCAATCAGTAAGTCTGATCTGTGGACCATTCAGTGTGCAAGTCTCAGGTTATGTTGGA TTCTTTGATGTTGGTCCTTTCTCGAGGAATGCTTCTCTATTTGGGGTTTGTTTGATGAGAATAATCAAAATATCTGTTAGAAGTCTTTTTGAGGTTTATG TCGGGGTCACTCGTGGGAACTCCGTAGGAAATACTTCTGTTATTCTTTCTCGGCAAAAAGCTATGGCAGACCTACAGCAGATGCAAACTGTGCATCTGGA GAAGCTGAGTGACAATCAGTGCCAACCTGAATCCCAGTTGAAGTTTATTACTGAGGCATGGTTGCAGATAGTTGAATGTCGCCGAGTTTTGAAGTGGACA TATGCGTATGGTTATTATTTACCTGAACACGAGCATGCTAAGAGGCAGTTTTTTGAGTATCTGCAAGGCGAGGCAGAGTCTGGTTTAGAGAGACTGCATC AATGTGCAGAGAAGGAGCTTCAAGTGTACCTGAATTCCGAGGGCCCTTCAAAAGACTTCAATGAGTTCCGCACCAAACTTGCCGGATTGACTAGTGTGAC TAGGAACTACTTTGAGAATCTAGTGCGTGCTTTAGAGAATGGTCTATCAGATGTGGACGCTCATGGGACCACCAGCAGAACAGGAAGCTCAAAAGGCATA GGTGGGAGTAGTAAGGGAAGAGGAGGCAAAGGCAAGGGGTCTACATCTAGATCGTCAAGTGGCCCGAGTAGAGGTATCGATGATTCAACTCACTGGTCCT GTGAACACTGCACCTATGCTAACATAAAATCGGCCACCATATGTGCAATGTGCCAGCAACGTCGTTAG
AA sequence Show only first row Show all	>Lus10020229 pacid=23141999 polypeptide=Lus10020229 locus=Lus10020229.g ID=Lus10020229.BGIv1.0 annot-version=v1.0 MESEDEFDMQDAAESAEDDFYSGGDDGFDSDDADVADYEFISNDSDDSDDLISHRHQQNYTILSEADICRRQDDDVARIATVLSISKVSASILLRYYNWS VSKVNDAWFADEEKVRKAVGLLEEAAVTFPDGKEMTCGICFETYPCDKLHAAACGHPFCSSCWAGYIGTSINDGPGCLMLRCPDPSCAAAVGQDMINALA AKEDKEKYNRYFIRSYIEDNRKTKWCPAPGCDYAVDFIVGSASYDVSCGCSYSFCWNCTEEAHRPVDCGTVGKWILKNSAESENMNWILANSKPCPKCKR PIEKNQGCMHITCTPPCKFEFCWLCLGAWSEHGERTGGFYAFNRYETAKQEGAYDDAEKRRVMAKNSLERYTHYYERWATNQSVSLICGPFSVQVSGYVG FFDVGPFSRNASLFGVCLMRIIKISVRSLFEVYVGVTRGNSVGNTSVILSRQKAMADLQQMQTVHLEKLSDNQCQPESQLKFITEAWLQIVECRRVLKWT YAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNSEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDAHGTTSRTGSSKGI GGSSKGRGGKGKGSTSRSSSGPSRGIDDSTHWSCEHCTYANIKSATICAMCQQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	0	1
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	2.6	0.8706
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	4.9	0.8599
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	7.4	0.8556
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	8.2	0.8373
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	11.0	0.8612
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	13.0	0.8386
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	13.0	0.8316
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	13.5	0.8382
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	14.3	0.8536
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	14.8	0.8429

Compare expression of checked genes

Lus10020229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.