Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16260 468 / 5e-161 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 49 / 7e-06 Splicing factor, CC1-like (.1.2.3) AT4G36690 48 / 1e-05 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT5G09880 43 / 0.0005 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026858 [exp] 847 / 0 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012902 [exp] 47 / 2e-05 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10005059 [exp] 47 / 3e-05 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 47 / 3e-05 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10030555 [exp] 45 / 9e-05 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10038139 [exp] 43 / 0.0007 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179000 [exp] 540 / 0 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G078200 [exp] 526 / 0 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G137200 [exp] 49 / 1e-05 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 47 / 2e-05 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.011G050400 [exp] 45 / 0.0001 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G228600 [exp] 44 / 0.0004 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G170700 [exp] 43 / 0.0004 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.005G258000 [exp] 42 / 0.0006 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020230 pacid=23142006 polypeptide=Lus10020230 locus=Lus10020230.g ID=Lus10020230.BGIv1.0 annot-version=v1.0 ATGGCTGAAGTTACGTATTGGTATGTTCTTGGTGCTGAGCAACAGCAACTGGGACCTTATACATCTTCTGAGCTCCAACATCCTATGTCCTTTTGGTTGT CCATTGGCTTTGTTCCATCGGCTCAATACTGGGTTGGTTTCTTAAGTGCTGTTGAACCATCTACTTTCTACATTTACTTTGCATCGACAGAGCATTTCTT AAGTGGCTACTTCCTCGAAAATACACTTGTATGGTCCGAAGGAAGAAGCGAATGGCAGCCTTTATCATCAGTCCCTGAGTTGATATCAACGATTGCCCAA CGCGGGTCAGATGTCTCTTCTTCAGCACCCACCAGCAGGACTGGTGTCGCAGATGTCCCTAATGGTGATCATGAAGATGAATTTGAGAAATGGCAGAGAG AGGTCACTGAGGCGGAAGCAGAGGCAGAAAAGTTGAAAAATGGATCTGCTGCGAGCACAGTTGAGACTGATAATGATGCAGCTGTATCATCTCCTCCGGA CGGTGAGCAAGAATTCACAGATGATGATGGGACAACATACAAGTGGGATAAAAGTTTGAGAGTGTGGGTTCCTCAGGAAGATGTAAAAAGCGTAAATGAG CAGTATCAGCCTGAAGATATGACTTTCTCGAAGGAAGAGGAAGTTTTTCCAATCCTGAATGTTGGTGATGCATCCTCTGTAGCAAAAGAGCTCGGTGTTG CTGATGAAACAGTAGAATCAAACAATGATCGGAAAAGGAAATTGCAGGAAACACTAACAGAGGAGAAGGATAAACCGGTTGACAAGAAGGAACCAAATAA ACCACCGGATAGTTGGTTTGAATTGAAAGTCAATACGCATGTTTATGTAACTGGGTTGCCTGACGATGTCACCGCTGAAGAAGTGGCTGAAGTGTTCTCC AAATGCGGAATCATTAAGGAGGTAGTACTGATTTTTCTTAATCCTGCTTGTTCCGATCCTGAAACAAAAAAACCTCGCCTGAAGATCTACATGGATAGAG AGACAGGACGAGTAAAAGGAGATGCATTAGTTACATACTTAAAGGCAATTGATTGCTCTTCAGCTGGTTTCTGTATTTTGGAGGAACCCTCAGTTGACCT TGCTTTACAAATATTAGATGGAACACCTTTACGTCCAGGTGGTACAACCCTTATGACAGTCAGCAGAGCTAAATTTGAACAGAAAGGGGATAAATTTATT TCCAAAAAGGTAGATGGAAACAAGAAGAAGAAACTGAAGAAGGTTGAGAACAGAATTCTTGGGTGGGTATTCGTATGTAATAATACCTTGCTTGATGAAC TTGAGCAAGCTGCTGATGAGAATCTGTGTTCCGAGCTAGAGGAGGATGTCAAAGAAGAATGCTCAAAGCTGGGCCCAGTTGATTCTGTCAAGGTGTGTGT AAATCACCCTCAGGGGGTTGTTCTGGTGAGATTTAAGGACAGGAAGGATGCCCAAAAGTGCATAGAGATGATGAACGGACGGTGGTTCGGGGGTCGACAA GTACATGCAAGCGAAGACGACGGAGTGGTTAATCATGCTATGGTACGCGATTATGATGCTGACGCCCAGCGGCTGGAGCAGTTTGGTGCTGAACTGGAAG CAGACTGA
AA sequence Show only first row Show all	>Lus10020230 pacid=23142006 polypeptide=Lus10020230 locus=Lus10020230.g ID=Lus10020230.BGIv1.0 annot-version=v1.0 MAEVTYWYVLGAEQQQLGPYTSSELQHPMSFWLSIGFVPSAQYWVGFLSAVEPSTFYIYFASTEHFLSGYFLENTLVWSEGRSEWQPLSSVPELISTIAQ RGSDVSSSAPTSRTGVADVPNGDHEDEFEKWQREVTEAEAEAEKLKNGSAASTVETDNDAAVSSPPDGEQEFTDDDGTTYKWDKSLRVWVPQEDVKSVNE QYQPEDMTFSKEEEVFPILNVGDASSVAKELGVADETVESNNDRKRKLQETLTEEKDKPVDKKEPNKPPDSWFELKVNTHVYVTGLPDDVTAEEVAEVFS KCGIIKEVVLIFLNPACSDPETKKPRLKIYMDRETGRVKGDALVTYLKAIDCSSAGFCILEEPSVDLALQILDGTPLRPGGTTLMTVSRAKFEQKGDKFI SKKVDGNKKKKLKKVENRILGWVFVCNNTLLDELEQAADENLCSELEEDVKEECSKLGPVDSVKVCVNHPQGVVLVRFKDRKDAQKCIEMMNGRWFGGRQ VHASEDDGVVNHAMVRDYDADAQRLEQFGAELEAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	0	1
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	2.6	0.8670
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	2.8	0.8839
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	3.9	0.8700
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	5.2	0.8875
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	5.7	0.8828
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	6.7	0.8574
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	8.7	0.8738
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	14.5	0.8630
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	16.0	0.8272
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	16.5	0.8530

Compare expression of checked genes

Lus10020230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.