Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34270 306 / 3e-105 TIP41-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026859 [exp] 437 / 2e-156 AT4G34270 399 / 1e-140 TIP41-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298500 [exp] 355 / 2e-124 AT4G34270 397 / 3e-140 TIP41-like family protein (.1) Potri.009G093200 [exp] 355 / 3e-124 AT4G34270 401 / 7e-142 TIP41-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04176 [flax] [poplar] TIP41 TIP41-like family
Representative CDS sequence Show only first row Show all	>Lus10020231 pacid=23141949 polypeptide=Lus10020231 locus=Lus10020231.g ID=Lus10020231.BGIv1.0 annot-version=v1.0 ATGGCCGAGGAGGTAGACGAGAAGGATCTGAAAGCCGCCGGAGCTGAGCTTTTGACCGACGGCCTCCGCGGACTCCGTATTCATGGCTGGGAGATTGTCT CCAAGACTGGCTCTATTCTCAACTCCTCCACTGTTGCACAGTGGGAGGAGAAACTGCAGACCTCTCACCTACCCGAGATGGTCTTTGGCGACAGCTGTCT AGTTCTGAAGCATATCAAGAGTGGCACCAAAATCCATTTTAATGCATTTGATGCACTAACCGGTTGGAAGCAGGAAGCTTTGCCCCCAGTTGAAGTTCCT GCTGCTGCACAATGGAAATTCAGAAGCAAGCCGTTCCAACAGGTGATACTAGATTATGATTATACATTCACGACACCGTACATTGGAAGTGAAACTATTG AGACCCAGTGTGAAACTGGAGAACCCATTTATGCAAGTGGCAGGCTTCAATGGGAGGATTGCAAGGAACGAATTGATGTTGCTTCCCTAGCTTCAAAAGA GCCTATTCTTTTCTATGACGAGCTTAGAGTTGATGGAGTCCTGATGAGATTACGGGATACTCGCATCCATTGTGCTTTTAGTGACAGTCCCAGGCCTGTC ATCCTTCGTGAAAGTTGCTGGAGACAAGCAACCTTCGAGGCTCTGTCTGCTAAAGGGTACCCCGTTGATGATTCTGCTTACAGTGATCCTAACAACATCA GCCACAGGCTTCCAGCCGTTATGCATAGGACTCAAAAGCTTAGAGGTCCCTTGTAA
AA sequence Show only first row Show all	>Lus10020231 pacid=23141949 polypeptide=Lus10020231 locus=Lus10020231.g ID=Lus10020231.BGIv1.0 annot-version=v1.0 MAEEVDEKDLKAAGAELLTDGLRGLRIHGWEIVSKTGSILNSSTVAQWEEKLQTSHLPEMVFGDSCLVLKHIKSGTKIHFNAFDALTGWKQEALPPVEVP AAAQWKFRSKPFQQVILDYDYTFTTPYIGSETIETQCETGEPIYASGRLQWEDCKERIDVASLASKEPILFYDELRVDGVLMRLRDTRIHCAFSDSPRPV ILRESCWRQATFEALSAKGYPVDDSAYSDPNNISHRLPAVMHRTQKLRGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34270			TIP41-like family protein (.1)		Lus10020231 [exp]	0	1
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	3.0	0.8904
AT4G34270			TIP41-like family protein (.1)		Lus10026859 [exp]	4.5	0.8782
AT5G59613			unknown protein		Lus10005899 [exp]	6.9	0.9133
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	8.5	0.8897
AT2G35360			ubiquitin family protein (.1)		Lus10004553 [exp]	10.6	0.8727
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	13.3	0.8676
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	13.4	0.8751
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	16.5	0.8762
AT1G11320			unknown protein		Lus10013574 [exp]	17.3	0.8929
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	32.2	0.8712

Compare expression of checked genes

Lus10020231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.