Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36890 700 / 0 BGLU42 beta glucosidase 42 (.1.2) AT3G18070 482 / 2e-167 BGLU43 beta glucosidase 43 (.1.2) AT3G18080 481 / 9e-167 BGLU44 B-S glucosidase 44 (.1) AT1G26560 464 / 5e-160 BGLU40 beta glucosidase 40 (.1) AT5G54570 453 / 2e-155 BGLU41 beta glucosidase 41 (.1) AT2G44450 448 / 6e-154 BGLU15 beta glucosidase 15 (.1) AT5G44640 444 / 2e-152 BGLU13 beta glucosidase 13 (.1) AT2G44480 443 / 1e-151 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 436 / 2e-149 BGLU12 beta glucosidase 12 (.1) AT3G60130 431 / 8e-147 BGLU16 beta glucosidase 16 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037098 [exp] 496 / 9e-173 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10031234 [exp] 493 / 3e-171 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 493 / 4e-171 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031808 [exp] 490 / 3e-170 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 488 / 2e-169 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10031235 [exp] 486 / 2e-168 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10004654 [exp] 478 / 3e-165 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031251 [exp] 473 / 3e-163 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10037988 [exp] 456 / 5e-156 AT5G54570 741 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178800 [exp] 763 / 0 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.012G049300 [exp] 489 / 1e-169 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.004G040700 [exp] 482 / 4e-167 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 482 / 4e-167 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.008G094200 [exp] 478 / 1e-165 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.T085301 [exp] 474 / 8e-164 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 473 / 1e-163 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.010G159900 [exp] 473 / 1e-163 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 462 / 4e-159 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.001G222800 [exp] 447 / 2e-153 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10020232 pacid=23142033 polypeptide=Lus10020232 locus=Lus10020232.g ID=Lus10020232.BGIv1.0 annot-version=v1.0 ATGAGGAAGGACGAATTTCTCCACCACCATTTACCAACCACGACCATCGACAGCGATAAGGAACAAACAGTCAGCCGCACTCACTTCCCTCCCGATTTCC TCTTCGGAGTTGCCACTTCCGCCTACCAGATTGAAGGTGGCGCCAATGCAGGCGGCAGGGGGCCCAGCATTTTGGATGCTTTTACCCACTCTCCTGGCAC TGTTCTTGATGGATCAAATGGTGATGTCGCTGTAGATCATTACCATCGCTACAAGGAAGACGTTGAACTCATTTCCAAATTAGGGTTTCAAGCTTATCGA TTTTCCATATCCTGGTCTCGCATCTATCCCGATGGTTCCAGGAAAGTCAACGAGGAAGGGGTTGCATTCTACAACAACCTTATCAATGCTCTCCTAGACA AGGGCATTGAGCCATATGCAACACTATACCACTGGGATCTTCCTCTGCACCTTCAACAAGCCTTTGAAGGCTGGTTAAGTAAAGATATCGTGAGGTCCTT TGCCACCTACGCAGATACTTGCTTTGCAAGCTTTGGTGATAGAGTTAAGAATTGGATCACCATTAATGAGCCCCTTCAGACAGCAATTAATGGATATGAC TGTGGGATATTTGCTCCTGGAAGAGATGAACAGTCTGCTACCGAACCATATTTGGCAGCTCACCACCAGATCTTGGCTCATTCAGCGGCTGTTTCTGTAT ATCGAAGCAAGTACAAGGATCTTATTCAGGAGACGCAAAAAGGACAGATAGGTTTGGTGGTAGACTGTGAATGGGCGGAACCCAACTCAAACAGTCCGGA AGACAAAGCTGCTGCAGCAAGACGCATTGACTTTCATCTTGGATGGTACTTGCATCCATTGTATTATGGAGACTATCCCAGTTGTATGCGTGAAACTCTT GGAGATGCGCTCCCTAAGTTCTCAAATGAAGAGAAAGAAGAGATGCTTCAAAACACCATGGATTTTGTTGGGCTGAATCATTATACGTCAAGGTTCATTG CCCATGTACCAGGTGGTGGTGATGCCGAAACTAATTTCTATAAAGCACAATCGATGAAGAGGATTCATGAATGGGAAGACGGAGAGCCAATTGGTGAGAA GGCTGCATCGGAATGGCTATACGTTTGCCCATGGGGACTGAGGAAGGTCCTGAATTACGTAGCCAAGACATACAAATCCCCCAAAATATATATAACAGAG AATGGGATGGACGATGAAGACAGCGATGCGCCACTTGAGGAAATGCTGGATGATAAGATGAGAGTACGCTACTTCAAAGGGTACCTTAAAGCGGTAGCAG AGGCAATCAGAGATGGAGTGGATGTGAAGGGTTACTTTGCATGGTCGTTGCTGGACAACTTCGAGTGGGCGCAAGGTTACACCAAGCGATTTGGGATAGT GTACGTGGACTACAAGGACGGGAAGCTGACTCGCCACCCAAAGTCGTCTGCATATTGGTTCTTGAGGTTCCTTAAGGGTGGTGAGGAAGGGAAAGACACA AAACAAGAATGA
AA sequence Show only first row Show all	>Lus10020232 pacid=23142033 polypeptide=Lus10020232 locus=Lus10020232.g ID=Lus10020232.BGIv1.0 annot-version=v1.0 MRKDEFLHHHLPTTTIDSDKEQTVSRTHFPPDFLFGVATSAYQIEGGANAGGRGPSILDAFTHSPGTVLDGSNGDVAVDHYHRYKEDVELISKLGFQAYR FSISWSRIYPDGSRKVNEEGVAFYNNLINALLDKGIEPYATLYHWDLPLHLQQAFEGWLSKDIVRSFATYADTCFASFGDRVKNWITINEPLQTAINGYD CGIFAPGRDEQSATEPYLAAHHQILAHSAAVSVYRSKYKDLIQETQKGQIGLVVDCEWAEPNSNSPEDKAAAARRIDFHLGWYLHPLYYGDYPSCMRETL GDALPKFSNEEKEEMLQNTMDFVGLNHYTSRFIAHVPGGGDAETNFYKAQSMKRIHEWEDGEPIGEKAASEWLYVCPWGLRKVLNYVAKTYKSPKIYITE NGMDDEDSDAPLEEMLDDKMRVRYFKGYLKAVAEAIRDGVDVKGYFAWSLLDNFEWAQGYTKRFGIVYVDYKDGKLTRHPKSSAYWFLRFLKGGEEGKDT KQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	0	1
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	1.0	0.9336
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	4.9	0.9207
AT2G14835			RING/U-box superfamily protein...		Lus10012365 [exp]	5.3	0.9158
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	6.3	0.9308
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042148 [exp]	8.5	0.9094
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	9.0	0.9020
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	9.2	0.9114
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	10.0	0.9026
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	10.5	0.9236
					Lus10025731 [exp]	11.0	0.9137

Compare expression of checked genes

Lus10020232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.