Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16270 280 / 1e-80 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 84 / 2e-16 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G05490 65 / 2e-10 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT5G40840 60 / 6e-09 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020235 [exp] 1442 / 0 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10026862 [exp] 1219 / 0 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 84 / 4e-16 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10023028 [exp] 81 / 3e-15 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10022338 [exp] 59 / 2e-08 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10041587 [exp] 56 / 1e-07 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078500 [exp] 595 / 0 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.010G178600 [exp] 583 / 0 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 97 / 2e-20 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.017G067400 [exp] 71 / 3e-12 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 61 / 3e-09 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10020233 pacid=23141975 polypeptide=Lus10020233 locus=Lus10020233.g ID=Lus10020233.BGIv1.0 annot-version=v1.0 ATGCAATTGCATTATTCAATTCTTTCCCCTGATGTACCAATCGCACTTAGACTGTCCAGTCATCTTCTGGTTGGTGTGGTGAGGATATATTCTAGGAAGG TGAATTACCTTTTCGATGATTGCAGTGAGGCTTTGCTAAAGATAAAGCAAGCTTTTCGATCCACTGCAGTTGATTTACCACCTGAAGAGTCAACTGCTCC CTATAACTCTATCACCTTGCCTGAAACTTTTGATCTTGATGATTTTGAACTTCCAGATGATGATATTCTCCAAGGTAATTATGTTGACCATCACGTTAGT TCAAAGGAGCAAATCACCCTTCAAGACTCGATGGAGGGTGTGGTTTACACCACATCTCAATTTGGATTGGATGAACGCTTTGGTGATGGTGATGCTTCTC AAGTTTGTTTGGACCTTAAAGAGGATTTGTTCCTTGACAAGGCTGCAGCTTCAGGAACCAATGGGATTTTAGAGATGTCCATCAATGATGTTGAAGATCC AAAAAGAGATGAAACCGACCACAGAACTGCAGGATTATCTGAATCCTGTCCTGTCAATAATAGTGTAAACGAGATTGGGGATCGAACTTCAAATGCAGAG CTTATTGAATATGCACAGGCTCCATCTACTCCTGTATTAGTAGAAGAGCCAAACCTATCCAGTGTTCAGCATGGGCTGGTCTGTGATGATCATTTAGAAT CTGAAGATCGCAATTCAGCAGATATACATGGTGTGGAGAACACAGAAAATGTTTATAGCAAGGTTGATCGTCGACACAGGGATGAAGCAATTGATTCATC AGTAGGTGATCGTATTCAATGCCTCGAAGAAGAGCAGGATATATTTCTGGCTTCTGACTTAACAATAAATAAAGCAAAGCTCAAAGCTGCTGTATGCTCT TCTCCAGTGTCTATGGAGTACATACAGAAAGATAGAACTACTGGTGAGTTGCAGGATGCAAATAAGGTGGGCAAAAAAAGTGACGACGAAGTAGGGCATG AACAACCTAGTCACCCGTTGGAGTCAACAGACGAGAAATGTGAAGAAGCTATTGGGGCCAGATTGCTTGGAAGTGGTAATACTGATGTTCCGAGAGATGT TGAAGGACAATTGCTTGAGTTACCTCATGCTCCTGGGCATTCTAATACCGAAACTCAGGGAGACGTGAGTTTAAACATTGATATCAACAACGGAAAAATT TCTTCTTCTACCAATATGGTTGGATTGCAAGCTTGCATTGCCTCCATACTTCAACCTGACATACAATCAGTGCCATCCTCTGCAGACCCATCAAAAACAG AAGATGTCCCATGTTCGCATGGAGATTCTACTGATATGCAAGGTGTGGAGTCTCATTTAGTTGACCGCACAATGTTGGACAATGCTCATGTTGTACAACC AGGTCGCGAGGGAGAAATCATGGATGGAAGCGTTAGACTGGATGATAACGTAGTGAACGAGATCCCGAAGAGTGACCATTCTGAGAAATTGAATGACTTG TCTGCACCTGAAAAGATGCTTTCTGTACCAGAAAAGCTTCTTGATGGGCCTGATCAGTTCTTTGGTGCATTAACACCAGCCAGTGAATTCTTAGAAAGCG CTAATGGGACTAGTGTTGGTAGCAGAGTTGCTGGGAGAAAGAGAAGCTTTACAGAAAGTACCTTAAACATAGGAGATATAAATCCTTCGGAGTCCCTTGG ACTATCTAGATCCAAAAGGACCCAAGAGACTATTCCTGATGATGATTTGCTGAGTTCTATTTTAGTTGGAAGAAAATCTTCAAGTTTGAGGCTGAAGCCT AGTCCGCCTGCTCCAGAGGTGAAATCTGCAAAACGGTCTCGTCCCAGTTCCCGTCTTAGTGCCTCAAAGAGGAAAGTGCTTATGGATGAGACAATGGTTC TGCATGGAGATACTATACGTCAGCAATTGACTAATACCGGGGACATACGTCGTGTACGAAAGAAGGCTCCTTGCACACGCATTGAGATATCGATGATACA AAGACAGGCTTTGGAAGTTCAAGTTTTTAATGAACCTATATTAACTGGTATGGTAAATGGCTTGGCGTCTTTGCACAATGGAAACTTTGATTTGAGGGGT ATTCGGATCATTAAACATGATCCATCTTCAAAAATTAGCATGCGTGTAGAACGTGCTGCTACACTTATCAACCAATATGGTGATTTAGAGAAGAGCACTG AACCTGTGGACTGTTTAGCAGTTGATGTTGAGCAACCAATTGGGGTTCATGTTCCAACTGAGGAACTGCAAGCTGAGGAGTCATTCCATCAACTCCGAGA TTCCATCATCGAACTCCTCTTGTGTTTCAAAAACTCATCAACACCAAAACAAAAACCTCAAGAAAACTTTTTCCAGTTTTCTTTCAATCTCATCAATGAT GAATGA
AA sequence Show only first row Show all	>Lus10020233 pacid=23141975 polypeptide=Lus10020233 locus=Lus10020233.g ID=Lus10020233.BGIv1.0 annot-version=v1.0 MQLHYSILSPDVPIALRLSSHLLVGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYNSITLPETFDLDDFELPDDDILQGNYVDHHVS SKEQITLQDSMEGVVYTTSQFGLDERFGDGDASQVCLDLKEDLFLDKAAASGTNGILEMSINDVEDPKRDETDHRTAGLSESCPVNNSVNEIGDRTSNAE LIEYAQAPSTPVLVEEPNLSSVQHGLVCDDHLESEDRNSADIHGVENTENVYSKVDRRHRDEAIDSSVGDRIQCLEEEQDIFLASDLTINKAKLKAAVCS SPVSMEYIQKDRTTGELQDANKVGKKSDDEVGHEQPSHPLESTDEKCEEAIGARLLGSGNTDVPRDVEGQLLELPHAPGHSNTETQGDVSLNIDINNGKI SSSTNMVGLQACIASILQPDIQSVPSSADPSKTEDVPCSHGDSTDMQGVESHLVDRTMLDNAHVVQPGREGEIMDGSVRLDDNVVNEIPKSDHSEKLNDL SAPEKMLSVPEKLLDGPDQFFGALTPASEFLESANGTSVGSRVAGRKRSFTESTLNIGDINPSESLGLSRSKRTQETIPDDDLLSSILVGRKSSSLRLKP SPPAPEVKSAKRSRPSSRLSASKRKVLMDETMVLHGDTIRQQLTNTGDIRRVRKKAPCTRIEISMIQRQALEVQVFNEPILTGMVNGLASLHNGNFDLRG IRIIKHDPSSKISMRVERAATLINQYGDLEKSTEPVDCLAVDVEQPIGVHVPTEELQAEESFHQLRDSIIELLLCFKNSSTPKQKPQENFFQFSFNLIND E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020233 [exp]	0	1
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	1.0	0.9685
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	5.3	0.9510
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	6.3	0.9591
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	6.6	0.9576
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	8.7	0.9583
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	8.8	0.9485
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	9.2	0.9484
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	10.1	0.9536
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	12.0	0.9502
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	15.3	0.9385

Compare expression of checked genes

Lus10020233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.