Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36890 217 / 2e-69 BGLU42 beta glucosidase 42 (.1.2) AT3G18070 150 / 2e-44 BGLU43 beta glucosidase 43 (.1.2) AT3G18080 143 / 8e-41 BGLU44 B-S glucosidase 44 (.1) AT5G54570 141 / 4e-40 BGLU41 beta glucosidase 41 (.1) AT3G60130 139 / 9e-40 BGLU16 beta glucosidase 16 (.1.2.3) AT1G26560 138 / 6e-39 BGLU40 beta glucosidase 40 (.1) AT2G44480 135 / 1e-38 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 136 / 2e-38 BGLU15 beta glucosidase 15 (.1) AT5G24540 135 / 5e-38 BGLU31 beta glucosidase 31 (.1) AT5G24550 135 / 6e-38 BGLU32 beta glucosidase 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020232 [exp] 305 / 3e-103 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2) Lus10026861 [exp] 270 / 7e-94 AT5G36890 236 / 4e-76 beta glucosidase 42 (.1.2) Lus10031808 [exp] 154 / 7e-45 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 152 / 3e-44 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 149 / 7e-43 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10009644 [exp] 147 / 3e-42 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10009218 [exp] 147 / 1e-41 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10036885 [exp] 145 / 1e-41 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 145 / 1e-41 AT1G26560 785 / 0.0 beta glucosidase 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178800 [exp] 249 / 1e-81 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.004G040700 [exp] 155 / 1e-45 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 154 / 7e-45 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 154 / 8e-45 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.004G109699 [exp] 145 / 8e-43 AT5G44640 288 / 5e-94 beta glucosidase 13 (.1) Potri.010G159900 [exp] 146 / 4e-42 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G223724 [exp] 145 / 7e-42 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223720 [exp] 145 / 8e-42 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222800 [exp] 145 / 8e-42 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 145 / 9e-42 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10020234 pacid=23141983 polypeptide=Lus10020234 locus=Lus10020234.g ID=Lus10020234.BGIv1.0 annot-version=v1.0 ATGTTTCTCATTTCCACTGTGTCATCAGATGAATGGGAAGACGGAGAACCAATTGGTGAGAAGGCTGCATCGGAATGGCTATACGTTTGCCCATGGGGAC TGAGGAAGGTCCTGAATTACGTAGCCAAGACATACAAATCCCCCAAAATATATATAACAGAGAATGGGATGGACGATGAAGACAGCGATGCGCCACTTGA GGAAATGCTGGATGATAAGATGAGAGTACGCTACTTCAAAGGGTACCTTAAAGCGGTAGCAGAGGCAATCAGAGATGGAGTGGATGTGAAGGGTTACTTT GCATGGTCGTTGCTGGACAACTTCGAGTGGGCGCAAGGTTACACCAAGCGATTTGGGATAGTGTACGTGGACTACAAGGACGGGGAGCTGACTCGCCACC CAAAGTCGTCTGCATATTGGTTCTTGAGGTTCCTTAAGGGTGGTGAGGAAGGGAAAGACACAAAACAAGAATGA
AA sequence Show only first row Show all	>Lus10020234 pacid=23141983 polypeptide=Lus10020234 locus=Lus10020234.g ID=Lus10020234.BGIv1.0 annot-version=v1.0 MFLISTVSSDEWEDGEPIGEKAASEWLYVCPWGLRKVLNYVAKTYKSPKIYITENGMDDEDSDAPLEEMLDDKMRVRYFKGYLKAVAEAIRDGVDVKGYF AWSLLDNFEWAQGYTKRFGIVYVDYKDGELTRHPKSSAYWFLRFLKGGEEGKDTKQE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020234 [exp]	0	1
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	10.1	0.8442
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	10.2	0.8606
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	13.1	0.8505
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	16.7	0.7553
AT5G64090			unknown protein		Lus10020420 [exp]	16.9	0.8420
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	22.6	0.8352
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	25.0	0.8120
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	29.8	0.8378
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	31.9	0.8262
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	33.6	0.8203

Compare expression of checked genes

Lus10020234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.