Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 98 / 5e-21 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 79 / 4e-15 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44670 74 / 2e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19050 72 / 7e-13 NB-ARC domain-containing disease resistance protein (.1) AT5G17680 69 / 7e-12 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44630 67 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 67 / 2e-11 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 67 / 2e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G14370 66 / 5e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 64 / 2e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042714 [exp] 766 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 519 / 2e-169 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001788 [exp] 482 / 2e-162 AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10000945 [exp] 440 / 2e-147 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 457 / 1e-142 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10020238 [exp] 439 / 3e-141 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10037406 [exp] 437 / 3e-140 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018308 [exp] 426 / 3e-139 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10008026 [exp] 342 / 2e-108 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030700 [exp] 91 / 1e-18 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 79 / 4e-15 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 76 / 5e-14 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070393 [exp] 71 / 2e-12 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 70 / 3e-12 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.017G127800 [exp] 70 / 3e-12 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.019G070651 [exp] 67 / 3e-11 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 66 / 5e-11 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 66 / 8e-11 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 66 / 8e-11 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020237 pacid=23144034 polypeptide=Lus10020237 locus=Lus10020237.g ID=Lus10020237.BGIv1.0 annot-version=v1.0 ATGGCTCATATCGGACGGGAAAGAGGGGCGCAAGTGGTGGTTGATCGAGACAAAAAGATGAAGGTCTTCCGATTCTTCGATTTGTATGGAGGTCTTTCAT TTGGCACGATGATTGGAGAGGATGGGAGTGGAGTCCAGGTGGCGAACAACCTGAAAGTTATAAATCTAACTGGCTGCTTCATGTTAGAAAGAGTTCCCAA ATTGGTCCAATGTGAGAGTCTAGAGTCGATAGATCTCACCGACTGCTCCGGAATGAGAGGGGAACTCAATGTCGGCGGTTTCAGGAATTTAAAAGTAGTA AGGTTTCCAGGGACAGAAATCACCGACTTAACAGGTGACATGGGAAAGCTTCAAAAACTCCAAGAGATAAAAACATGTACGTCGGTCTGGAAGGCCCAAG AAATAGTACTCCCTACATGCATAAAACGGCTAACCATCTCATGTCCTAAAGTTTCCAATCTTCTGGAGCTTAAGGACTTGGAGGAGCTATGCTTTATGGA ATGTGATGCTGCTCCCGTAATTCCCGGGGGTATATGGCAGCTGACGAAGTTGAAGACTTTAGAGCTTTACAAGTGCAAAAGAAATGGCAATCTTCTGGCG GATGAAGAAGGTACCCTCCCATCGTCTCTAAACTCACTTATCATTCATGGCCGTTTTTTTCGGTACAGACTACCAAATCTTGCAAATTTGAATAGTTTGA CTGAGCTGCGGTTGACAAATGTCTGGATAAGCGAAATTCGCGGTCTGGGAGAGCTGAGAATGCTGGAAGTTCTTGTTATATTATCCTCAGCTGTATACAA TCTATGCGGCCTTGAAAATCTTGTGCGCCTGAAAGAGCTGACCCTGCAAAATTGTCGTAGACTCGAGAGTCTACCCAGTCTATCAACCTTGGTCAAGTTG CACGGTCTAGAGATCACTAAGTGTAGGGTTCTCTCCAAGATTCAAGGTTTGGGTGGACTGAGGAGATCATTGTTACGTCTGAAAATAAGTGAATGTGACA GGCTAGTAAACATTGAAGGCGCTGAATCTCTGGAGGCACTGGAAAGTTTGACATGGGAGTCAGATCGATTCCGAGCGCTGGCCCCTGAAGTTCTAGGTTT GGGTCCATGCAAACAGTTACCCGATCTTTCGCTTCTCCAGGACCTGAAAGAATTGTACATTGCAGGGTGGGTAGAGTTCACCGAGGTCAAAGGCCTTGAA AGGTTAACGTCGTTAAAATCCCTAGTAATGGAAGCCTGCACGTCGCTTAGGAGGTTGCCCGATCTATCAGGTCTCAAGGACTTGGAGACGTTGAATGTTT GGGGCTGCTTACAATTGGTGGATGTGACAGGAATCCAAGGATTGGAATCGTTGCTAAAGCTGAACATGTCTTTGTCATCAATTAAGGAGTTGCCTGATAT ATCCGGGCTGAACAATTTGAAGCGGTTAGATGTTAGTCAATGCATCCAGTTAACTGAGGTCGTCGGTTTAGATAAACTGGAGGAGTTACGAGGGTTGGAC ATGGGCGATTGTCTGTCGATTAAGAAGTTGCCAGATATGTTAGGTCTCGAGAACCTGATGTATTTAAATTTGAAGGGATGCATTCAGTTGAAGGATGTGA AAGGACTTCAGAAATTGAAGAACGTAGCGTATGTGGCAATGGGGAAACGGTTAAAAGTGAACCATTACTTGAAATCGGCTACGGCGTATGGTAAGCAGTG TGGTAAGCAATTGTCACACTCTGTTCGCCGTCGTCTGAAGAATTGA
AA sequence Show only first row Show all	>Lus10020237 pacid=23144034 polypeptide=Lus10020237 locus=Lus10020237.g ID=Lus10020237.BGIv1.0 annot-version=v1.0 MAHIGRERGAQVVVDRDKKMKVFRFFDLYGGLSFGTMIGEDGSGVQVANNLKVINLTGCFMLERVPKLVQCESLESIDLTDCSGMRGELNVGGFRNLKVV RFPGTEITDLTGDMGKLQKLQEIKTCTSVWKAQEIVLPTCIKRLTISCPKVSNLLELKDLEELCFMECDAAPVIPGGIWQLTKLKTLELYKCKRNGNLLA DEEGTLPSSLNSLIIHGRFFRYRLPNLANLNSLTELRLTNVWISEIRGLGELRMLEVLVILSSAVYNLCGLENLVRLKELTLQNCRRLESLPSLSTLVKL HGLEITKCRVLSKIQGLGGLRRSLLRLKISECDRLVNIEGAESLEALESLTWESDRFRALAPEVLGLGPCKQLPDLSLLQDLKELYIAGWVEFTEVKGLE RLTSLKSLVMEACTSLRRLPDLSGLKDLETLNVWGCLQLVDVTGIQGLESLLKLNMSLSSIKELPDISGLNNLKRLDVSQCIQLTEVVGLDKLEELRGLD MGDCLSIKKLPDMLGLENLMYLNLKGCIQLKDVKGLQKLKNVAYVAMGKRLKVNHYLKSATAYGKQCGKQLSHSVRRRLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10020237 [exp]	0	1
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	15.5	0.7142
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	99.4	0.7040
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	116.3	0.6738
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10000050 [exp]	181.0	0.6718
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	189.6	0.6610
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	189.8	0.6795
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	207.8	0.6706
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	277.5	0.6534

Compare expression of checked genes

Lus10020237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.