Plant FIBer expression Database

Lus10020239 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05920 181 / 2e-55 DHS, EDA22 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042728
[exp]
189 / 1e-58 AT5G05920 629 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10029688
[exp]
198 / 2e-34 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10032793
[exp]
100 / 2e-27 AT5G05920 99 / 3e-26 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10028867
[exp]
0 / 1 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G186900
[exp]
171 / 9e-52 AT5G05920 651 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF01916 DS Deoxyhypusine synthase
Representative CDS sequence
>Lus10020239 pacid=23144200 polypeptide=Lus10020239 locus=Lus10020239.g ID=Lus10020239.BGIv1.0 annot-version=v1.0
ATGGTAAGCCCCGGTGTTCAAAGAATCGGAGTCTCTGCCTCTCTGGAAGGAAAATCCAATAGGATCAAAGGCTACGACTTCAACCAAGGAGTTGATTACC
CTCAGCTTCTCAAATCAATGCTCTCAACTGGCTTCCAAGCTTCCAACCTCGGCGACGCTATTTCAGTCGTTAATCAGATGACTGGAGTGGCCATTGCTGA
AGATTGCGAGAAAGACCCTGCTTATAGAGAGTCTGTGAGGTGCAAAATTTTCCTGGGTTTCACATCTAATCTGATTTCGTCCGGTGTTAGAGGTACAATC
CGCTATCTCGTCCAGCATCACATGTTGAGTGTTGATGTAGTGATGACAACTGCAGGTGGCATTGAGGAAGATTTGATCAAAATGTATGGCCCCTGCTTAC
AGGAGAGACTTCTCTCTACCTGGATCCCAGCTGCGTGCAAAGGGGTTGAATCGCATTGGCAACTTAATATGATGCGTAACGGTGCAGATTACGTGGTTTT
CGTCAATAAACCGCAAGAATTTGACGGTAGTGATTCTGGAGCTCCGCCCGATGAAGCTGTGTCGTGGGGGAAAATACGAGCCTCTGCTAAAACTGTCAAG
GTACACTGTGATACAACGATCGCTTTTCCCCTGCTGGTTGCTGAGACATTTGCTACGAGACAACAACAAAGCATCAAGGTGAAGACTTGA
AA sequence
>Lus10020239 pacid=23144200 polypeptide=Lus10020239 locus=Lus10020239.g ID=Lus10020239.BGIv1.0 annot-version=v1.0
MVSPGVQRIGVSASLEGKSNRIKGYDFNQGVDYPQLLKSMLSTGFQASNLGDAISVVNQMTGVAIAEDCEKDPAYRESVRCKIFLGFTSNLISSGVRGTI
RYLVQHHMLSVDVVMTTAGGIEEDLIKMYGPCLQERLLSTWIPAACKGVESHWQLNMMRNGADYVVFVNKPQEFDGSDSGAPPDEAVSWGKIRASAKTVK
VHCDTTIAFPLLVAETFATRQQQSIKVKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05920 DHS, EDA22 embryo sac development arrest ... Lus10020239
[exp]
0 1
AT2G47810 CCAAT NF-YB5 "nuclear factor Y, subunit B5"... Lus10004796
[exp]
14.9 0.6589
AT2G14830 Regulator of Vps4 activity in ... Lus10018577
[exp]
21.4 0.6240
AT3G25440 LOH1 LAG One Homologue 1, RNA-bindi... Lus10009569
[exp]
26.8 0.6521
AT1G78160 APUM7 pumilio 7 (.1) Lus10036469
[exp]
153.6 0.5798

Lus10020239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.