Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28150 348 / 4e-121 Plant protein of unknown function (DUF868) (.1) AT3G04860 337 / 7e-117 Plant protein of unknown function (DUF868) (.1) AT2G04220 188 / 4e-58 Plant protein of unknown function (DUF868) (.1) AT4G12690 187 / 7e-58 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 170 / 6e-51 Plant protein of unknown function (DUF868) (.1) AT2G27770 166 / 2e-49 Plant protein of unknown function (DUF868) (.1) AT5G11000 153 / 1e-43 Plant protein of unknown function (DUF868) (.1) AT3G13229 141 / 3e-40 Plant protein of unknown function (DUF868) (.1) AT2G25200 127 / 3e-34 Plant protein of unknown function (DUF868) (.1) AT2G36470 88 / 8e-20 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001787 [exp] 564 / 0 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 285 / 2e-95 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 284 / 5e-95 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 187 / 2e-57 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 187 / 3e-57 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 168 / 4e-50 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 160 / 8e-47 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 157 / 6e-46 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 147 / 2e-42 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050900 [exp] 389 / 3e-137 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 385 / 1e-135 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 337 / 2e-116 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 327 / 9e-113 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 197 / 2e-61 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 196 / 3e-61 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 188 / 9e-58 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.007G101000 [exp] 184 / 2e-56 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.012G089100 [exp] 184 / 3e-56 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.005G068100 [exp] 183 / 6e-56 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10020240 pacid=23144065 polypeptide=Lus10020240 locus=Lus10020240.g ID=Lus10020240.BGIv1.0 annot-version=v1.0 ATGAGAGATTTCCCCTCTTGCTTCGGCGAGAATGGAGTACAGGTAGCCGATTACTCCTCATCTTCCTCTTCATCAACCGCCGCTACTAAATCTGCTCAGA ATGTAGTCACTTGCCTTTACCAATGTCGAATCCGCGGCCGATCCTGCTTGATCACTGTAGCTTGGAGCAGGAGCTTAATGGGTCAGGGACTCGCCATCAC AATCGAAGACCATTCTTCGAATCAGTGTCTTTGTAAAGTTGAAATCAAGCCCTGGTTGTTCACCAAGCGAAAAGGCTCCAGAAGCATGGAATCAATCGAC ATCTTTTGGGATCTCTCTTCAGCTAAGTTCGGATCAGGCCCTGAACCTCAGCAAGGGTTCTACGTCGCTGTTTTGGCAGATAGGAAAATGGTTATTCTCC TTGGAGACTTGAGGAAAGAAGCTTACAAGAAAACTTGCTTCAATGCTGCCATTCCCAGTCAAGTAGCTAATTCAATCTTTGTAGCTAAGAAAGAACATGT CTTTGGCAAGAAAGTGTTTGCCACCAGAGCTCAGTTCTGCAACGAGGGGCGAATCCACGACTTAGTGCTGGAATGTGACACGATCGGGGATGTTAGTGAT CCGTGTCTTGTGGTTCGAGTGGACTTTAAGACTGTGATGCAGGTCAAGAGACTGCGTTGGAAGTTTCGTGGTAATCATACTGTGGTGGTTGATGGAATGG AAGTGGAAGTCCTGTGGGATGTTTATAACTGGTTATTTGGTGTTGGGAATGCTGCTGTGTTCATGTTCAGGACTTGTGGGAAGTACTTGTGGCACGATTC GAGCTCGTGGAGGCTTCTTGATTCGAAATCGGGTACTCATGATTTTTCGCTGCTGTTGTATGCTTGCAAAGAGTGA
AA sequence Show only first row Show all	>Lus10020240 pacid=23144065 polypeptide=Lus10020240 locus=Lus10020240.g ID=Lus10020240.BGIv1.0 annot-version=v1.0 MRDFPSCFGENGVQVADYSSSSSSSTAATKSAQNVVTCLYQCRIRGRSCLITVAWSRSLMGQGLAITIEDHSSNQCLCKVEIKPWLFTKRKGSRSMESID IFWDLSSAKFGSGPEPQQGFYVAVLADRKMVILLGDLRKEAYKKTCFNAAIPSQVANSIFVAKKEHVFGKKVFATRAQFCNEGRIHDLVLECDTIGDVSD PCLVVRVDFKTVMQVKRLRWKFRGNHTVVVDGMEVEVLWDVYNWLFGVGNAAVFMFRTCGKYLWHDSSSWRLLDSKSGTHDFSLLLYACKE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28150			Plant protein of unknown funct...		Lus10020240 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	8.4	0.7951
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	12.6	0.7825
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	19.7	0.7744
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	24.0	0.7268
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	24.2	0.7666
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	29.3	0.7497
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	29.4	0.7557
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	30.8	0.7275
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	31.4	0.7619
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	33.8	0.7376

Compare expression of checked genes

Lus10020240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.