Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11790 421 / 6e-148 NDL2 N-MYC downregulated-like 2 (.1) AT5G56750 419 / 3e-147 NDL1 N-MYC downregulated-like 1 (.1) AT2G19620 402 / 3e-140 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001786 [exp] 646 / 0 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1) Lus10026433 [exp] 384 / 1e-133 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038100 [exp] 527 / 0 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1) Potri.006G230800 [exp] 437 / 4e-154 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G067700 [exp] 432 / 3e-152 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G054900 [exp] 425 / 2e-149 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03096 [flax] [poplar] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Lus10020241 pacid=23144171 polypeptide=Lus10020241 locus=Lus10020241.g ID=Lus10020241.BGIv1.0 annot-version=v1.0 ATGGAGGGTTCGAGCGGCGAATCGGTTTCGATACACATTGACGACATGCTGTCATTTGGTGGGAAGGAGTGTGTGGTGAAGACGAGCAAAGGAGCAATCT CTGTGTATGTCTGTGGGGATCAAGAGAAGCCGCCTTTGATTACTTACCCAGATGTTGGTTTGAACTTCATGTCTTGCTTCGAAGGTCTATTCTATTGCCC AGAAGCAGCTCCATTGTTGCTTCACAACTTCTGCATATACCACATTGATGCCCCGGGCCATGAGTTGGGAGCTGATGTTATATCTCCAGATGCTCCATTG CTCAGTGTTGATGACTTGGCAGACCAGGTTGCCGAAATTCTTGATTACTTTGGGCTGCAGCAAGTCCTATGCTTAGGTGTTACTGCTGGTGCCTATATTC TTACACTCTTTGCAATGAAATATAGAGAACGCGTGCTCGGACTGATTCTTGTTTCCCCCATATGCAAAACTCCCTCATGGACTGAATGGCTTTACAATAA GGTGTTATCGAATGTATTGTACTTCTACGGAATGTGTGGGATAATGAAGGAATGCCTTCTCCAGCGTTACTTCAGTAAGGAAATGAGGTGCGGTGTGCAT GGTACGGAATCGGACATCATTCAGGCTTGCCGAAGGGTGAGCAAGATCTTGTCTTTTCATAGCAATCAGTTCATGAGAGCATCGAGACACGATCTTTCGG ACAGCTTGCACAAGCTGGAGTGCAAGACTCTTGTATTTGTAGGCGAAAGCAGTCCGTTCAGGGACGAAGCTGTGTACATGAGTTCGAGAATGGGCAAGCA AAGCTGCGCGCTTGTCGAGGTTCAGGCATGTGGATCACTGGTGACAGAAGAACATCCATATGCAATGATAATCCCAATGGAGTTCTTCCTCATGGGTTTC GGTTTCTACAGACAACCGACCGAGTCGTCTTCTTTGTCATCGAGTAATGGATCCAACCATTCGAGTCCCTTGGGGGAATGCTGCATTGCACCGGAGCTTC TGTCTCCGGAGAGCCTTGGTATCAAGCTGAAACCGATCAAAACTCGTATAAACAGCTGCATGATCTGA
AA sequence Show only first row Show all	>Lus10020241 pacid=23144171 polypeptide=Lus10020241 locus=Lus10020241.g ID=Lus10020241.BGIv1.0 annot-version=v1.0 MEGSSGESVSIHIDDMLSFGGKECVVKTSKGAISVYVCGDQEKPPLITYPDVGLNFMSCFEGLFYCPEAAPLLLHNFCIYHIDAPGHELGADVISPDAPL LSVDDLADQVAEILDYFGLQQVLCLGVTAGAYILTLFAMKYRERVLGLILVSPICKTPSWTEWLYNKVLSNVLYFYGMCGIMKECLLQRYFSKEMRCGVH GTESDIIQACRRVSKILSFHSNQFMRASRHDLSDSLHKLECKTLVFVGESSPFRDEAVYMSSRMGKQSCALVEVQACGSLVTEEHPYAMIIPMEFFLMGF GFYRQPTESSSLSSSNGSNHSSPLGECCIAPELLSPESLGIKLKPIKTRINSCMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	0	1
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	3.2	0.8426
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	7.1	0.8438
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	7.9	0.8188
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	8.4	0.8133
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	9.2	0.8288
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	9.3	0.8394
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	11.5	0.8262
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	12.2	0.8304
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	16.0	0.8098
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	16.7	0.8303

Compare expression of checked genes

Lus10020241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.