Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04830 360 / 5e-124 Protein prenylyltransferase superfamily protein (.1.2) AT5G28220 352 / 1e-120 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001785 [exp] 435 / 3e-153 AT3G04830 480 / 1e-172 Protein prenylyltransferase superfamily protein (.1.2) Lus10015131 [exp] 79 / 9e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038700 [exp] 379 / 3e-131 AT3G04830 474 / 3e-170 Protein prenylyltransferase superfamily protein (.1.2) Potri.005G051300 [exp] 373 / 5e-129 AT3G04830 505 / 0.0 Protein prenylyltransferase superfamily protein (.1.2) Potri.013G038501 [exp] 155 / 6e-47 AT3G04830 145 / 2e-44 Protein prenylyltransferase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020242 pacid=23144155 polypeptide=Lus10020242 locus=Lus10020242.g ID=Lus10020242.BGIv1.0 annot-version=v1.0 ATGGTGACCAAAACGGAGGAGAGTCAATTGGAAAAGCTCGAGAGCCAGGTCGACAATGGCGGAGGAGGCGCCTGGGAGTATCTTTGCTTGGCGAGGAAGC TCAAGGTTAGGCGATCGGATAAGGTGTTGAAGTACGGCCTGTCCATTTTGAACGACTCCCGAAAGCGATCCAGCCTCGGCCCCGATGAGTGGACTCTGTA CGAACAAGTGGCGATTGCGGCTATGGATTGCCACGCTCTCGATGTTGCCAAGGATTCCATAACTGTATTGCAAAAGAAGTTCCCAGGGAGCAAAAGAGTT GGCAGATTGGAAGGAATGCTGCTCGAAGCAAAGGGTTCTTGGGAAGATGCCGAGCAAGCTTACTCAAGCCTTCTGGAGGACAACCCGTTGGATCAGGTAA TACACAAGAGAAGGATTGCCGTTGCGAAGGCACAGGGCAACATTTCGGCAGCCATTGATTTGCTAAACAAATATCTGGAAATATTCATGGCAGATCATGA CGCCTGGAGAGAGCTTGCAGAGATATACGTCTCCCTACAGATGTATAAGCAAGCGGCTTTCTGCTACGAGGAGCTGATATTATCTCAACCTACAGTCCCG ATTCATCATCTCGCCTATGCTGATTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATCCCGTGACT CAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATC CCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTC AAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATG AGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTG TTCTCATGAGTTCGTCAAACCATCCCGTGACTCAATGTTTGAAACACTGTCTTGTTCTCATGAGTTTGTCGAATATCAAAAGAAATACTTTGAGGCTGCT CGTATTACCACATAA
AA sequence Show only first row Show all	>Lus10020242 pacid=23144155 polypeptide=Lus10020242 locus=Lus10020242.g ID=Lus10020242.BGIv1.0 annot-version=v1.0 MVTKTEESQLEKLESQVDNGGGGAWEYLCLARKLKVRRSDKVLKYGLSILNDSRKRSSLGPDEWTLYEQVAIAAMDCHALDVAKDSITVLQKKFPGSKRV GRLEGMLLEAKGSWEDAEQAYSSLLEDNPLDQVIHKRRIAVAKAQGNISAAIDLLNKYLEIFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP IHHLAYADFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFV KPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVKPSRDSMFETLSCSHEFVEYQKKYFEAA RITT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04830			Protein prenylyltransferase su...		Lus10020242 [exp]	0	1
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10036266 [exp]	3.9	0.7715
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	6.4	0.8037
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	11.6	0.7636
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	11.7	0.7710
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	19.3	0.7796
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10041124 [exp]	25.5	0.7490
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	33.2	0.7050
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	33.7	0.7604
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	37.6	0.7389
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	42.6	0.7278

Compare expression of checked genes

Lus10020242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.