Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 663 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 652 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 631 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 610 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G44200 436 / 2e-142 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 413 / 4e-140 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 309 / 7e-98 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G50240 155 / 2e-39 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G53570 149 / 3e-38 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G69220 144 / 5e-36 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001783 [exp] 1043 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 808 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 806 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 566 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001857 [exp] 424 / 1e-137 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 423 / 2e-137 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 400 / 2e-132 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 395 / 1e-126 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 366 / 3e-121 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039000 [exp] 738 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.005G051600 [exp] 737 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.002G049400 [exp] 658 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G218100 [exp] 437 / 8e-143 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 425 / 6e-142 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 425 / 2e-141 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.009G020100 [exp] 433 / 4e-141 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 409 / 2e-136 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 408 / 2e-136 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 147 / 4e-37 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020244 pacid=23144109 polypeptide=Lus10020244 locus=Lus10020244.g ID=Lus10020244.BGIv1.0 annot-version=v1.0 ATGGATCAGTACGAGGTACTGGAGCAGATTGGAAAAGGGTCATTCGGCTCTGCTGTTCTTGTGAGGCACAAGCATGAAAAGAAGATGTATGTGTTAAAAC AGATCCGTCTTGCCCGTCAAACTGATAGATCACGTCGATCAGCTCATCAAGAGATGGAGCTGATTTCTAGAATAAGAAATCCTTTCATTGTAGAGTACAA AGATTCCTGGGTTGAAAAGGGTTGCTATGTCTGCATAATCATAGGTTATTGTGAAGGAGGAGACATGGCTGATGCTATAAGAAAAACCAATGGTGTTCTT TTCTCAGAAGAGAAGCTATGTAAGTGGGTTGTTCAACTTCTCATGGCGCTTGATTACTTGCACACGAATCACATTCTTCATCGTGATGTCAAGTGTTCCA ACATTTTCTTGACGAAAGGTCAAGACATTCGTCTCGGTGACTTTGGGCTTGCTAAAATTCTGACTTCCGACGACCTTGCATCTTCTATTGTGGGAACTCC TAGTTACATGTGCCCCGAGCTTCTCGCTGACATACCTTACGGTTCGAAATCAGACATTTGGTCTTTAGGTTGCTGTATATACGAAATGGCTTCCCTTAAG CCTGCATTCCGAGCATTTGATATGCAAGCCTTGATTAACAAAATCAACAGATCCATAGTATCTCCACTCCCAGCCCAATACTCTAGTCTCTTTCGAAGTC TCATCAAAAGCATGCTGCGCAAGAACCCAGAACTCAGGCCGACGGCTGCGGAATTGCTAAGGCATCCACACCTTCAGCCTTACGTCCACAAGATACACGT CAAGATCAATAGTCCTAGAGGAGACAACACATTGCCGTACCAATGGCCAGATAACAACTACATGAAAACCAGATTCTTGGACACGGTAATGGCTGCCAAA GACTCATTCTGTAACGAAAACAGGATGCTGAATCCGAGCATATCAGCAACGGATAGAGACTCAATCTGCTCCACCAAAGCAATGCATCGGAGAATGTCAG ACGTCTCTCTTGGATGCAGCCGTGCTACTGTAGTGATCTGTAAGCCCGTTGCCTCGAAAACTCGGAAAGCAGTAGGTTCATCCAGAGCCTCTCCTGCCCC TCGAAAGCCAGATCCTGCGAAGAAACGAGAACCGATCAAGAAACCAATTCTACCAAACCGGAGAGCGTCTCTACCAATTCCTAAGACAAAATCCACTAGA CAACAAAAACAACACCAACCTGATATCCTCCAGAGCTTGAAGTCTCCAGACATATCGGTCAACGCCCCCCGAATCGACAGGATACCCGAGTTCCCATTAT CTTCACCCGACGAGAAGACATTCTTCCATTTCCAAACAACTTCGCCCCCACGAAACATCGTCGATCGTTCCACGACGATCACCAAGGACAAATGCACCAC GTCATCATGGCAAGGCATCCGTTTCAGCATGTTGAAGCAGAAAGGTGAAGACGAGAACAACTCATCGTCGTCCAACCAAAATGCCACAGCTGGAGGGGCG TCGAGCAGGACCACCACCTCGTCGGACGCGAGGCGTCGGAAGTTCGACACCTCGTCGTACCGGCAGCGAGCCGAGGCGTTGGAAGGGCTGCTGGAGTTCA GCGCCAGGCTACTGAAGGAGGACAGGTACGATGAGTTGGGTGTGCTGCTGAAGCCGTTTGGTCCCGGGAAAGTTTCTCCCAGAGAAACCGCTATTTGGCT TGCCAAGAGCTTCAAAGAGAATACTACTACTGCCAAAGTTGATGATTTCTAA
AA sequence Show only first row Show all	>Lus10020244 pacid=23144109 polypeptide=Lus10020244 locus=Lus10020244.g ID=Lus10020244.BGIv1.0 annot-version=v1.0 MDQYEVLEQIGKGSFGSAVLVRHKHEKKMYVLKQIRLARQTDRSRRSAHQEMELISRIRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMADAIRKTNGVL FSEEKLCKWVVQLLMALDYLHTNHILHRDVKCSNIFLTKGQDIRLGDFGLAKILTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASLK PAFRAFDMQALINKINRSIVSPLPAQYSSLFRSLIKSMLRKNPELRPTAAELLRHPHLQPYVHKIHVKINSPRGDNTLPYQWPDNNYMKTRFLDTVMAAK DSFCNENRMLNPSISATDRDSICSTKAMHRRMSDVSLGCSRATVVICKPVASKTRKAVGSSRASPAPRKPDPAKKREPIKKPILPNRRASLPIPKTKSTR QQKQHQPDILQSLKSPDISVNAPRIDRIPEFPLSSPDEKTFFHFQTTSPPRNIVDRSTTITKDKCTTSSWQGIRFSMLKQKGEDENNSSSSNQNATAGGA SSRTTTSSDARRRKFDTSSYRQRAEALEGLLEFSARLLKEDRYDELGVLLKPFGPGKVSPRETAIWLAKSFKENTTTAKVDDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	1.0	0.8575
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	3.2	0.8222
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	4.2	0.8035
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	6.5	0.8134
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	6.6	0.7766
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	10.5	0.8052
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	14.5	0.7675
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	15.4	0.8116
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	17.3	0.7516
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	24.8	0.7683

Compare expression of checked genes

Lus10020244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.