Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 327 / 8e-114 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001781 [exp] 412 / 3e-147 AT2G32080 374 / 3e-131 purin-rich alpha 1 (.1.2) Lus10001782 [exp] 410 / 1e-146 AT2G32080 425 / 4e-151 purin-rich alpha 1 (.1.2) Lus10009182 [exp] 366 / 4e-129 AT2G32080 442 / 9e-158 purin-rich alpha 1 (.1.2) Lus10015921 [exp] 336 / 2e-117 AT2G32080 363 / 5e-127 purin-rich alpha 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224000 [exp] 370 / 2e-130 AT2G32080 458 / 2e-164 purin-rich alpha 1 (.1.2) Potri.001G000700 [exp] 366 / 4e-129 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 117 / 7e-32 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2) Potri.019G032001 [exp] 41 / 0.0001 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF04845 [flax] [poplar] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10020245 pacid=23144196 polypeptide=Lus10020245 locus=Lus10020245.g ID=Lus10020245.BGIv1.0 annot-version=v1.0 ATGTGCAAGACACTCCAAGTGGCGCACAAGCTGTTCTACTTTGATTTGAAGGATAATCCTCGAGGCCGGTACTTGAAGATCTCGGAGAAGACTTCGTCCA CCAGGTCTACGATCATCGTCCCTTCATCCGGTATTGCCTGGTTCTTGGACCTCTTCAATTACTTTGTCACTTCTAATGAGCAGGATTTGTTCAGCAAGGA GTTACCGTTGGACACCAAGATCTCAGAAGCTTTTGTTAGTAGAAACCGCAGTACGATCATTGTTCCTGCTGGAAGTTCCAGGGATGAATGTTGGGCTTCA TTTAGAAACATTCTGGAAGAGCTCAACGAAGCATCAAGGCTTTTCCTCCCTCCAGCCAATCAGCGAAGTTCGGAATCATCAGAGCGTCTAGTTGGGCTCT CTGACGATGTTGGCGCTGGCTTCATACCAGGGCATAGCAGCGAAACTGCTCCGACTCCGGAACTAAACGTGGATCGTGCGGTCGATTTACCAACTCAGGA CGAGATTGGTAACCTAGGGGCGTCGAAGGTCATCCGAGTCGACCAAAAGAGGTTCTTCTTCGATCTCGGCAGTAATAATCGTGGCCATTTCTTGAGGATC TCTGAGGTTGCTGGTGCTGATAGATCCTCCATAATTCTTCCACTTTCCGGACTGAAACAGTTCCATTAA
AA sequence Show only first row Show all	>Lus10020245 pacid=23144196 polypeptide=Lus10020245 locus=Lus10020245.g ID=Lus10020245.BGIv1.0 annot-version=v1.0 MCKTLQVAHKLFYFDLKDNPRGRYLKISEKTSSTRSTIIVPSSGIAWFLDLFNYFVTSNEQDLFSKELPLDTKISEAFVSRNRSTIIVPAGSSRDECWAS FRNILEELNEASRLFLPPANQRSSESSERLVGLSDDVGAGFIPGHSSETAPTPELNVDRAVDLPTQDEIGNLGASKVIRVDQKRFFFDLGSNNRGHFLRI SEVAGADRSSIILPLSGLKQFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	1.0	0.9681
AT4G10970			unknown protein		Lus10023075 [exp]	1.7	0.9583
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	2.8	0.9447
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	2.8	0.9626
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	3.0	0.9446
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	3.3	0.9419
AT1G30140			unknown protein		Lus10024751 [exp]	3.5	0.9548
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	3.7	0.9451
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	3.9	0.9498
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	4.1	0.9388

Compare expression of checked genes

Lus10020245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.