Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04780 261 / 2e-88 Protein of unknown function (DUF1000) (.1) AT2G25950 59 / 4e-10 Protein of unknown function (DUF1000) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001780 [exp] 319 / 4e-111 AT3G04780 295 / 8e-104 Protein of unknown function (DUF1000) (.1) Lus10007454 [exp] 62 / 7e-11 AT2G25950 341 / 2e-120 Protein of unknown function (DUF1000) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039500 [exp] 268 / 2e-91 AT3G04780 310 / 9e-110 Protein of unknown function (DUF1000) (.1) Potri.005G052100 [exp] 267 / 1e-90 AT3G04780 310 / 1e-109 Protein of unknown function (DUF1000) (.1) Potri.018G056100 [exp] 54 / 2e-08 AT2G25950 366 / 5e-131 Protein of unknown function (DUF1000) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF06201 [flax] [poplar] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Lus10020246 pacid=23144141 polypeptide=Lus10020246 locus=Lus10020246.g ID=Lus10020246.BGIv1.0 annot-version=v1.0 ATGTCGTCTACTGCACCAGCAGCTGCTTCCAGTGCGATTCAACGGAACCAAGTTGATCTAGTTGACTTCGTCGACTGGTCTGGAGTTGAATGCCTTAACT ACAACTCTGGCCACCCAATTGCCAATGCTCTCAAACAGGGTTACAGGGAGGATGATGGGTTGAACTTGGAGAGTGATGCGGATGAGCAGCTATTGATTTA CATACCTTTCAATCAAGTTGTTAAGCTGCACTCTATTGCTCTCAAGGGGCCTGAAGAAGAGGGTCCGAAGACAGTGAAGCTTTTCTCAAACAAGGAGCAT ATGGGGTTCAGTAATGTGAATGATTACCCTCCTAGTGATACTGTCGTACTGTCAGAAGATGGTGTGCAGGGAAAACCTGTACCGTTGAAGTATGTTAAGT TTCAGAACGTCCGTAGTGTGACGATTTTTATTGAGGACAATCAGGCTGGGGGAGATGTTACTAAAGTTCAGAAGATTGCATTGTTTGGATCCACTATGCT AGTCCAAGTGTACCGTAAAAGGAGGAGTGTCTGGCCGGAGGAGGAATGGACGGCTGGTCATCGCTGGAGCATCGGAGATTGGTGGTCACCGGTCGATGTT CGAGTGAGAGCTTCTGTCTTGAGGGAGTCTTGGTGCGGTCGCGGAAAAGTTAATTTTGTTGTGTTCTATAATAATCTATATGCATCGTTCTTGACGAGTT TTCTGCCTCTGTCATTGTCGTTCCAAGTCATAGATTCGTTCACCATCGAGATGACCGCACCGCCGTTCGAGCCATCCTACGTCTGGAGAGTTGAATTAAA GACCCGTCGAACCATGGGCGGAGATAGTACTCCACAAGCTCGTGTTGGAACCCATGCCGAAAGTGACGCTGAGGCTGTTGGCGGCAGTGGTTAG
AA sequence Show only first row Show all	>Lus10020246 pacid=23144141 polypeptide=Lus10020246 locus=Lus10020246.g ID=Lus10020246.BGIv1.0 annot-version=v1.0 MSSTAPAAASSAIQRNQVDLVDFVDWSGVECLNYNSGHPIANALKQGYREDDGLNLESDADEQLLIYIPFNQVVKLHSIALKGPEEEGPKTVKLFSNKEH MGFSNVNDYPPSDTVVLSEDGVQGKPVPLKYVKFQNVRSVTIFIEDNQAGGDVTKVQKIALFGSTMLVQVYRKRRSVWPEEEWTAGHRWSIGDWWSPVDV RVRASVLRESWCGRGKVNFVVFYNNLYASFLTSFLPLSLSFQVIDSFTIEMTAPPFEPSYVWRVELKTRRTMGGDSTPQARVGTHAESDAEAVGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	0	1
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	3.5	0.8814
AT5G64180			unknown protein		Lus10008120 [exp]	4.0	0.8642
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	4.6	0.8295
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	4.7	0.8294
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	4.8	0.8279
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	8.9	0.8707
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	9.3	0.8701
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	9.9	0.8471
AT5G16950			unknown protein		Lus10021093 [exp]	11.4	0.8617
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	11.5	0.8563

Compare expression of checked genes

Lus10020246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.