Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28840 719 / 0 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G62830 116 / 9e-29 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 115 / 2e-28 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 111 / 4e-27 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G46440 109 / 5e-27 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 108 / 2e-26 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 107 / 5e-26 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT1G73250 95 / 7e-22 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT1G17890 92 / 6e-21 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G45310 86 / 3e-18 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001777 [exp] 780 / 0 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10015915 [exp] 764 / 0 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 758 / 0 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10030368 [exp] 119 / 9e-30 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 117 / 2e-29 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 117 / 5e-29 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10040847 [exp] 115 / 7e-29 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 110 / 3e-27 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 109 / 8e-27 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053000 [exp] 741 / 0 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 740 / 0 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.002G204400 [exp] 119 / 6e-30 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 117 / 3e-29 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G053100 [exp] 114 / 1e-28 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 112 / 4e-28 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 109 / 7e-27 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.006G214000 [exp] 108 / 5e-26 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 104 / 1e-24 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.018G101700 [exp] 97 / 1e-22 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10020247 pacid=23144057 polypeptide=Lus10020247 locus=Lus10020247.g ID=Lus10020247.BGIv1.0 annot-version=v1.0 ATGGGAAGCAACGATGAAGCCAGCTATGGATCGTACACCTACGAGGAGCTCCAGCGGGAGCTTTACTGGCCATCGGAGAAGCTGAGGATCTCCATAACCG GAGCCGGAGGGTTCATCGCATCGCACATAGCCAGGCGTCTAAAGAGCGAAGGGCACTACATCATCGCTTCGGACTGGAAGAAGAACGAGCACATGACCGA GGACATGTTCTGTCACGAATTCCACCTTGTGGATCTTAGGGTCATGGACAATTGCTTGAAGGTCACGAATGGTGTAGACCATGTCTTCAACTTGGCTGCC GATATGGGCGGGATGGGGTTCATCCAGTCAAACCATTCCGTCATCATGTACAACAATACCATGATCAGCTTCAACATGCTCGAAGCCTCCCGGATCAATG GTGTCAAGAGGTTCTTTTATGCCTCGAGTGCTTGCATATATCCCGAGTTTAAGCAACTGGAGACAAACGTGAGCTTAAAGGAAGCTGATGCTTGGCCAGC AGAGCCACAAGATGCTTACGGTCTGGAGAAGCTTGCAACAGAGGAGTTGTGCAAGCACTACACCAAGGACTTCGGGATCGAATGTCGTGTCGGAAGGTTC CACAACATCTATGGTCCTTTCGGAACATGGAAAGGTGGCAGGGAGAAGGCACCAGCTGCATTCTGCAGAAAGGCTCTCACGTCTGCCGAAAAGTTTGAAA TGTGGGGAGACGGTCTTCAAACTCGATCCTTCACCTTCATCGACGAGTGCGTCGAAGGAGTCCTGAGGCTGACCAAGTCCGACTTTCGCGAGCCAGTCAA CATTGGGAGCGACGAGATGGTAAGCATGAACGAAATGGCCGAGATTGTTCTGAGCTTTGAAGACAGGAAGCATCCCATCCACCACATTCCTGGCCCGGAA GGTGTTCGTGGTCGAAACTCGGATAATACTCTTATCAAGGAAAAACTCGGTTGGGCTCCGACCATGAAGCTGAAGGACGGGCTGAGGTTCACTTACTTCT GGATCAAGGAACAGATAGAGAAGGAGAAGGCGAAAGGTGTCGACTTGGCGGTTTATGGTTCGTCGAAAGTGGTAGGAACTCAGGCTCCGGTTCAGCTGGG ATCGCTCCGTGCTGCCGATGGCAAGGAATGA
AA sequence Show only first row Show all	>Lus10020247 pacid=23144057 polypeptide=Lus10020247 locus=Lus10020247.g ID=Lus10020247.BGIv1.0 annot-version=v1.0 MGSNDEASYGSYTYEELQRELYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAA DMGGMGFIQSNHSVIMYNNTMISFNMLEASRINGVKRFFYASSACIYPEFKQLETNVSLKEADAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRF HNIYGPFGTWKGGREKAPAAFCRKALTSAEKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDRKHPIHHIPGPE GVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKAKGVDLAVYGSSKVVGTQAPVQLGSLRAADGKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	1.4	0.9316
					Lus10028607 [exp]	3.2	0.9127
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	3.9	0.8815
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	7.2	0.8459
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	7.5	0.8779
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	7.7	0.8672
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	8.4	0.8401
AT4G23900			Nucleoside diphosphate kinase ...		Lus10023076 [exp]	8.8	0.8005
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	8.9	0.8235
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	10.2	0.8585

Compare expression of checked genes

Lus10020247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.