Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 470 / 1e-162 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 99 / 9e-22 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 98 / 1e-21 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT1G64780 91 / 2e-19 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 87 / 8e-18 AMT1;4 ammonium transporter 1;4 (.1) AT4G13510 85 / 2e-17 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001776 [exp] 954 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 600 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 599 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 597 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 596 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 557 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 554 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 513 / 3e-179 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 470 / 6e-163 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040401 [exp] 660 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 598 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 598 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 577 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 487 / 7e-170 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 486 / 1e-168 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 471 / 6e-163 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 469 / 3e-162 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 468 / 9e-162 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 465 / 2e-160 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10020248 pacid=23144129 polypeptide=Lus10020248 locus=Lus10020248.g ID=Lus10020248.BGIv1.0 annot-version=v1.0 ATGGACACGACTTCGTTGCTCCCACCGAACCTGATCCCCGACGAGGCGAATCCAGAATGGCTGAGCAAGGGGACCGACGAGGCGAATCCAGAATGGCTGA GCAAGGGGGACAACTCGTGGCAGCTGGCCGCGGCAGCGTTCGTGGGGCTCCAGTCGATCCCGGGGCTGGTGATCCTGTACGGTAGCTTGGTGAAGAAGAA ATGGGCGGTGAACTCGGCCTTCATGGCCCTCTACGCCTTTGCATCGGTCATGGTGTGTTGGGTCGGGTGGGGGTACAGGATGTCGTTTGGCGACAAGATG CTGCCGTTTTGGGGGTACCCTGCCGTTTCGTTGGATGCTGAGTTCTTGCTTCAGAAGGCCTTCTTGGGGAACTTCCCCACGGCTACTATGGTGTTCTTCC AGGGAGTGTTTGCATGTATAACGTTGATATTGGTGGCCGGCTGCTTGCTCGGAAGGATGAACTTCACGGCGTGGGTGATGTTCGTCCCTCTTTGGTTGAC GTTTTCCTACACCGTCGGAGCCTTCAGCGTTTGGTGTCCCGACGGCTGGCTCGCCAAGTTGGGGATCATCGATTTCTCCGGCGGCTATGTCATTCACGTC TCCGCCGGCGTCGCCGGCATCACGGCGTCGTTTTGGGTGGGCCCAAGGTTAGACAGAGACAGAGAAAAGTTCCCGCCGAACAACGTCATCCTGACGCTGG CCGGTGCCGGACTATTATGGATGGGGTGGAGCGGGTTCAACGGCGGCGGACCATTCGCCGCCAGCATAGACGCTTCCCTTGCCATCCTCAACACCCACGT GTGCACCTCCGTTAGCTTGCTGATGTGGATCCTCCTCGACTCCATATTCTTCGGTAAGCCTTCTGTCATCGGCGCGGTCCAAGGGATGATCGCCGGCCTC GTCTGTATTACTCCGGCGGCTGGAGTCGTGCAAGGCTGGGCGGCAATGATAATGGGAGTAATCTCCGGTACGGTCCCGTGGTACACGATGATGGTCCTCC ACAAACGCCTCCATTTTCTGACCCACGCCGACGACCCCATGGCGATCTTCCACACCCACGCCATCGCCGGAAGTCTTGGTGGGATCCTCACCGGAATATT CGCCGTTCCGAAGCTCTGCCGCCTCTTCTTCATGGTCCCCGAATGGGAAAGGGTTCCGGCAGCTAGGCATCCAGCTGGCGGGAATAGGGTTCATACTGTC TTAAATGTCGTCGTCACCACTCTAATATGTTGGTTGGTGGGGCTCATTGTTCCGTTGAGGATGCCGGAGGACAAGCTATACGTAGGAGATTACGCGGCCC ACGGAGAGGAGGCGTTCGCTCTGTGCAATGACGTGGATGGCGCGATGACGGCAGGGAATTCGAAGCCCGGTTCCCCATTCGAGAACTATGCTTCGAGAAG TTACGAGAACTACTTAAAAGATCGAAGCTACGTGTCTAATTCGAAGGGGCCGGAAAGGAGGTACGAGCATCCAATGATGTCGCCGGTGAGCGAGGAGCAG TCCCCGTATGACGGGGACGGGCGAAGGTATGTTAACTCGTTGTATGATGTTGACGATTCGTTTGCTCAGTCGAAATCTATCCAAATGGTTTGA
AA sequence Show only first row Show all	>Lus10020248 pacid=23144129 polypeptide=Lus10020248 locus=Lus10020248.g ID=Lus10020248.BGIv1.0 annot-version=v1.0 MDTTSLLPPNLIPDEANPEWLSKGTDEANPEWLSKGDNSWQLAAAAFVGLQSIPGLVILYGSLVKKKWAVNSAFMALYAFASVMVCWVGWGYRMSFGDKM LPFWGYPAVSLDAEFLLQKAFLGNFPTATMVFFQGVFACITLILVAGCLLGRMNFTAWVMFVPLWLTFSYTVGAFSVWCPDGWLAKLGIIDFSGGYVIHV SAGVAGITASFWVGPRLDRDREKFPPNNVILTLAGAGLLWMGWSGFNGGGPFAASIDASLAILNTHVCTSVSLLMWILLDSIFFGKPSVIGAVQGMIAGL VCITPAAGVVQGWAAMIMGVISGTVPWYTMMVLHKRLHFLTHADDPMAIFHTHAIAGSLGGILTGIFAVPKLCRLFFMVPEWERVPAARHPAGGNRVHTV LNVVVTTLICWLVGLIVPLRMPEDKLYVGDYAAHGEEAFALCNDVDGAMTAGNSKPGSPFENYASRSYENYLKDRSYVSNSKGPERRYEHPMMSPVSEEQ SPYDGDGRRYVNSLYDVDDSFAQSKSIQMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10020248 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	4.9	0.9009
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	8.6	0.8881
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	21.6	0.8488
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	24.5	0.8728
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	25.0	0.8645
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	27.2	0.8619
AT1G30870			Peroxidase superfamily protein...		Lus10020864 [exp]	30.2	0.7953
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019002 [exp]	31.5	0.8582
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	32.8	0.8656
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	35.2	0.8017

Compare expression of checked genes

Lus10020248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.