Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024934 [exp] 437 / 3e-150 ND / Lus10025503 [exp] 364 / 1e-121 ND / Lus10031082 [exp] 239 / 5e-73 ND / Lus10026716 [exp] 199 / 1e-59 ND / Lus10016109 [exp] 120 / 4e-29 ND / Lus10002735 [exp] 116 / 1e-27 ND / Lus10035468 [exp] 82 / 5e-18 ND / Lus10010702 [exp] 82 / 3e-16 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2) Lus10029182 [exp] 81 / 3e-16 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10020249 pacid=23144202 polypeptide=Lus10020249 locus=Lus10020249.g ID=Lus10020249.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGCCAAAGTTGCCGAGGTTCATTGCCTTGTACGCCAAGACAGCCAAGAAGTACGTCAAGTACCAGTCGGATGGAGGCCACGGCTATAAGC AGATCCTGACCGCTAAATCCGAGCAGCTCTCGAGCTCGCTCGCAAAATTCGAGGTCGTGGAGTCCACATCCGACCCGTCCATGGTCCACATCCGCTGCTG CTACAACAACAAGTACCTCCGGATCGACAACAGCAGCAACGGTCGGTTGATCACCGCCTCCATGGACGGGCCGGAGGAGAACCAGACGGTCTGGTATTCG ACCCTGTTCCAACCCGAGTTATTAACCGACGGAACCATCCGTCTGCTCCACATCAAGTCGGGATACTACATGCAGTGGCTGGACGCGGGCCCTAACAGCA TGTACCGGTCGTGGATCCACGTGATCTCGTCGGAACCGCTGATGCCCAAATCGGAGAATATTTTGCAAGTCATCGACTGGGACACGCTCTTCTCACTTCC CAGGCACTTGACTTTTAAAGGCGACAACGGGCTCTACCTGGGGCTTCTGAAGCAGAGCAGTGGTGCTGCTCTGCGGTTCGAGATTGGGAATGAACGCGAT GAATCGATCGTCAACGAGATTGTCGACTTGCTGGACGGGACTTTTCGGATTAAGAACGTGTCGGTTGGGGCTTTTTGGAGGGTTGATCCTCAAAGTGATG AGATGCGAGCCGATGATACATCAGCCACACCTACTCCATATTCTATGTTTTCTGCTACTAAGGTGAACGAAAACACAATCTCGATTCGCAACCACGGGAA CGGCAAGGTGTGCGTGAGATACACTACCGACCGTCTGACCAACGGGCTGACCGCAACCGAATACCAAATCACCCAACCCGCCCGACTTGTACTAACCGAG TTGGTCATTTCGAGGAAGATACTCGACATCAACTTCTACCTCAACGACGGCTGGGTCTACAACAAAATCACAAACGTGGTACTCAACTCGGGTCTGGTCG TGAGCAATCACACCGACAAACCACGAACCCTAGACGTGAAGATCCCGTACATGGACGTCAAGAGCAGCACTTGGGGAGTCATCATCCCTTCTCTAAAACT CGGGCGCCTTACGGTCAGGATCCAGCCCAAGGAGATCCCGAGTATCGCGGACTCGACCGCGATTCAGATGACGAATCCGTTTGAGTCCTCGTACGCCTGG GGAGAAACCACGACGAAGAGGGCCAGGGCGTACTGGCCGCACAGGGTGGCGTTGGAACCCATGAAGAAGGTGACGGTGAGGCTGTTCGCGACTTCTATTA CGTGCGAGGTTCCGTTCAACTACACTCGGTACGATCTTCTCGATGAAGGTACCGAGCGGGAGGATATCGATATTAAGGAGGATGGTGTGTACACCGGGAT GAATTACATCAATGTCACGGTTGAGGTCTCTGCACCGGAGCGAGTCTCGTGA
AA sequence Show only first row Show all	>Lus10020249 pacid=23144202 polypeptide=Lus10020249 locus=Lus10020249.g ID=Lus10020249.BGIv1.0 annot-version=v1.0 MAPPPKLPRFIALYAKTAKKYVKYQSDGGHGYKQILTAKSEQLSSSLAKFEVVESTSDPSMVHIRCCYNNKYLRIDNSSNGRLITASMDGPEENQTVWYS TLFQPELLTDGTIRLLHIKSGYYMQWLDAGPNSMYRSWIHVISSEPLMPKSENILQVIDWDTLFSLPRHLTFKGDNGLYLGLLKQSSGAALRFEIGNERD ESIVNEIVDLLDGTFRIKNVSVGAFWRVDPQSDEMRADDTSATPTPYSMFSATKVNENTISIRNHGNGKVCVRYTTDRLTNGLTATEYQITQPARLVLTE LVISRKILDINFYLNDGWVYNKITNVVLNSGLVVSNHTDKPRTLDVKIPYMDVKSSTWGVIIPSLKLGRLTVRIQPKEIPSIADSTAIQMTNPFESSYAW GETTTKRARAYWPHRVALEPMKKVTVRLFATSITCEVPFNYTRYDLLDEGTEREDIDIKEDGVYTGMNYINVTVEVSAPERVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020249 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	3.2	0.9064
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	8.7	0.9085
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	14.0	0.8905
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	14.1	0.8851
					Lus10019691 [exp]	14.7	0.8621
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	15.5	0.8980
					Lus10036826 [exp]	16.1	0.8765
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	17.0	0.9015
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	18.7	0.8806
AT3G02645			Plant protein of unknown funct...		Lus10019721 [exp]	18.9	0.8898

Compare expression of checked genes

Lus10020249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.