Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 65 / 4e-13 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020251 [exp] 155 / 1e-48 AT3G04720 67 / 7e-14 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001778 [exp] 98 / 5e-26 AT3G04720 58 / 1e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001779 [exp] 86 / 1e-21 ND / Lus10006556 [exp] 70 / 2e-15 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 69 / 8e-15 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 69 / 1e-14 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003265 [exp] 69 / 1e-14 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 68 / 2e-14 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 67 / 4e-14 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 70 / 3e-15 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 68 / 2e-14 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 66 / 9e-14 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 64 / 1e-12 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10020250 pacid=23144156 polypeptide=Lus10020250 locus=Lus10020250.g ID=Lus10020250.BGIv1.0 annot-version=v1.0 ATGAAGTTCATTTTCGCATCGCCGGTGATAGCATTATTAGCGACAGTACTGCTGATACTAATACTTTCAGCGACTGCCGCTACACATATCAATAGCGACG GTACAAACAACACCGACGGAAGTTCTCTTGCGGTCGTTAATGATTATGATCCGTTGGACAATTCTTTTCAGATGACTGCAACGACCCGTGATTTCCAAGC CTATCTGAAAAGTTGGAAGGTGCCGGAAAATCTCGCTTGCTACAATTGGCTTAAGGACGAGACGCTGGAATGGGGTCGCAGGTTCGGTTGGGTTTCACTC TGTCTACCCCATGGTCACGACCCTGTAAAAATCTGTGGCCGGTGTGTTCGGATACAGAAGTTAAATATGGATTACATAACAGCCCGAGTCGTCGACGAAT GCTCGACACAAGGCGGCGGAATTGAGTTGGACACCTATTCTGTGTTTTTTCCTATCGAGAGAACCCAGGCTGGAAGAGCTTCTGGTGAGGTTGCTGTGGA GTTCCACTTCGTAAGTTGCTACCAGTGA
AA sequence Show only first row Show all	>Lus10020250 pacid=23144156 polypeptide=Lus10020250 locus=Lus10020250.g ID=Lus10020250.BGIv1.0 annot-version=v1.0 MKFIFASPVIALLATVLLILILSATAATHINSDGTNNTDGSSLAVVNDYDPLDNSFQMTATTRDFQAYLKSWKVPENLACYNWLKDETLEWGRRFGWVSL CLPHGHDPVKICGRCVRIQKLNMDYITARVVDECSTQGGGIELDTYSVFFPIERTQAGRASGEVAVEFHFVSCYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	0	1
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	5.9	0.7041
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	7.3	0.7046
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	8.2	0.7953
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	9.8	0.7138
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	18.5	0.7238
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	18.6	0.6546
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	27.3	0.7002
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	27.3	0.6789
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	29.6	0.6444
					Lus10002267 [exp]	31.1	0.6409

Compare expression of checked genes

Lus10020250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.