Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 65 / 3e-13 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020250 [exp] 155 / 9e-49 AT3G04720 66 / 1e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001778 [exp] 120 / 6e-35 AT3G04720 58 / 1e-10 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001779 [exp] 93 / 2e-24 ND / Lus10020252 [exp] 86 / 2e-21 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 80 / 5e-19 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 71 / 1e-15 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 70 / 2e-15 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 68 / 8e-15 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 65 / 3e-13 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 66 / 1e-13 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 65 / 3e-13 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 65 / 4e-13 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 61 / 8e-12 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10020251 pacid=23144205 polypeptide=Lus10020251 locus=Lus10020251.g ID=Lus10020251.BGIv1.0 annot-version=v1.0 ATGAAGTTCATTTCTACAACGTCGGCGGTAGCAATATTAGCGACGGTGCTGGCACTACTTTCAGCGACGGCCTCTAAAGGTGTCAGCAGCGACGGGAGAA CTATCACGGCCGACGTCAAAGATTATCCGATCTACCGTAACGGCCATTCTTTTGTTACGAATGCTACGTACCGCAAGTACTATGCGGGGACGTACGATTG GAAGCTGACGTCGGATCTCGCTTGCTACCCTTTTTATCAGGACGAGGCACCGGAATGGGGTTCGAAGTTCGGTTGGGTTGCGTACTGTCTACCCTTTAAT CAGGACGACCTCGGCCCCAATATTTGTGGCCAGTGTGTTCGGATACAGAAGATAAATATGGATTACATAACAGCTCGAGTCGTCGACCAATGCAAGATAC CAGGCGGCGGACTTCAGTTGGACTATGACACCGTGTTTTTGCAGATCGAGAAGACCGAATCTGGGAGAGCTTCGGGTCAAGTACGAGTGGAGTACCACTT TGTAAGCTGCTTTCAATGA
AA sequence Show only first row Show all	>Lus10020251 pacid=23144205 polypeptide=Lus10020251 locus=Lus10020251.g ID=Lus10020251.BGIv1.0 annot-version=v1.0 MKFISTTSAVAILATVLALLSATASKGVSSDGRTITADVKDYPIYRNGHSFVTNATYRKYYAGTYDWKLTSDLACYPFYQDEAPEWGSKFGWVAYCLPFN QDDLGPNICGQCVRIQKINMDYITARVVDQCKIPGGGLQLDYDTVFLQIEKTESGRASGQVRVEYHFVSCFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020251 [exp]	0	1
AT1G18530			EF hand calcium-binding protei...		Lus10039961 [exp]	6.9	0.7936
					Lus10039453 [exp]	7.4	0.8015
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	26.6	0.7238
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	45.4	0.6648
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	54.9	0.6679
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003866 [exp]	122.9	0.6629
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	132.9	0.6767
					Lus10006648 [exp]	148.0	0.6778
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	193.7	0.6670
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	199.3	0.6651

Compare expression of checked genes

Lus10020251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.