Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 134 / 6e-40 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001774 [exp] 314 / 3e-111 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 220 / 5e-74 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003265 [exp] 139 / 5e-42 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 136 / 2e-41 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 137 / 8e-41 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006557 [exp] 129 / 3e-38 AT3G04720 191 / 2e-62 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 126 / 3e-37 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 112 / 2e-32 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020251 [exp] 91 / 2e-23 AT3G04720 67 / 7e-14 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041600 [exp] 142 / 4e-43 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041900 [exp] 141 / 7e-43 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 141 / 7e-43 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 138 / 1e-41 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10020252 pacid=23144150 polypeptide=Lus10020252 locus=Lus10020252.g ID=Lus10020252.BGIv1.0 annot-version=v1.0 ATGAAAACTTTCTCCACCGTTTCATTTGTTCTCGCTATAGTAATACTTTTCGTCACAACATCGGTCGCTAAAGCTCGAACTAATGGCGACGGCAAGGCGG TTTTTACTGGCAGCCGATCCGGTTCTTTGGATGCGGATTTGATGGACACCAAAATCGGCAGTACCGGGGAATGTAAAGCTACGTTCCACTACTACAGACC AAGGAACATGGGGTGGAACATGCGGGATCCCACGGTGAACACCTATTGCTCGACTTGGGACGCTAACAAACCGCTGTCTTGGCGCTCGAAGCACGGCTGG ACCGCCTTCTGTCGGCCCAATCTTGTACCGATCGGGGAATCGATTTGTGGGAAGTGCTTAAAGGTGAAAAACGTAAAGACTGGAGCGAGTACAATAGCAA GGATCGTCGACCAGTGCACGAAACCGGAAGGAGGACTCGATTTGGATGACCAGACTGTGTTTAAGGTGATTGATACCGATAAAAAAGGGATTATTCACGG TCATTTGAAGGTGACTTACCGGTTTGTGAGTTGCTGA
AA sequence Show only first row Show all	>Lus10020252 pacid=23144150 polypeptide=Lus10020252 locus=Lus10020252.g ID=Lus10020252.BGIv1.0 annot-version=v1.0 MKTFSTVSFVLAIVILFVTTSVAKARTNGDGKAVFTGSRSGSLDADLMDTKIGSTGECKATFHYYRPRNMGWNMRDPTVNTYCSTWDANKPLSWRSKHGW TAFCRPNLVPIGESICGKCLKVKNVKTGASTIARIVDQCTKPEGGLDLDDQTVFKVIDTDKKGIIHGHLKVTYRFVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	0	1
					Lus10008920 [exp]	2.6	0.9190
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	3.0	0.9447
					Lus10010697 [exp]	4.2	0.9447
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10008443 [exp]	4.9	0.7308
					Lus10008327 [exp]	5.2	0.9447
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10025976 [exp]	5.7	0.7046
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	6.0	0.9447
AT1G61667			Protein of unknown function, D...		Lus10006749 [exp]	6.5	0.6604
AT5G20610			unknown protein		Lus10025003 [exp]	6.7	0.9447
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	7.3	0.9220

Compare expression of checked genes

Lus10020252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.