Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43620 43 / 3e-05 Chitinase family protein (.1) AT3G54420 41 / 0.0002 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 41 / 0.0002 Chitinase family protein (.1) AT2G43570 41 / 0.0002 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 41 / 0.0002 Chitinase family protein (.1) AT2G43600 41 / 0.0002 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001773 [exp] 191 / 2e-62 AT2G43570 51 / 6e-08 "chitinase, putative", chitinase, putative (.1) Lus10020338 [exp] 71 / 5e-16 AT2G43620 57 / 2e-10 Chitinase family protein (.1) Lus10001772 [exp] 63 / 4e-13 AT2G43610 44 / 5e-06 Chitinase family protein (.1) Lus10014253 [exp] 44 / 5e-06 AT2G43570 46 / 1e-06 "chitinase, putative", chitinase, putative (.1) Lus10025948 [exp] 44 / 3e-05 AT2G43610 50 / 3e-07 Chitinase family protein (.1) Lus10003585 [exp] 41 / 3e-05 AT3G12500 47 / 1e-07 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 41 / 0.0002 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10006552 [exp] 40 / 0.0003 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003584 [exp] 39 / 0.0003 AT2G43610 44 / 2e-06 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093800 [exp] 43 / 4e-05 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 42 / 5e-05 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 42 / 9e-05 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 40 / 0.0005 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 40 / 0.0005 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.005G054000 [exp] 39 / 0.0005 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041900 [exp] 39 / 0.0006 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.009G141800 [exp] 39 / 0.0008 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.013G041600 [exp] 39 / 0.0008 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10020253 pacid=23144186 polypeptide=Lus10020253 locus=Lus10020253.g ID=Lus10020253.BGIv1.0 annot-version=v1.0 ATGGAAAAATCAGCGACCGATGCTGCATTTCTGTCCCTAATAGTGGTATTATTCGTGACAACAGTGTTTTCCTCTGTCGCTAATGGTCAGGACTGCGGCG AAGATGGCCACAACGCCCGTTGCTCGGGCGACAACTGTTGCAGCCAGAGTAGCTGGTGTGGGATCTCTGACGGACACTGCGGTGACGGCTGTCAGGCGGG CTTCGGAAAGTGCTCGTCGTCCGGTGGCGGCAGCGGTGTCCCCGGTCCAGATCCCAGCATATCCTTCTTCGAATTGGACGATGGACGATATTCGCCACCG GAGCCGATAATGAAGAACCTCACGCACGAAGACAGTTATTACAACACTCCAAACTGCGGGAGTCAGGCCGGCGGTAAAGAGTGTGAAGATACAAAATACT GCTGCAGTCACTTTGGTTTCTGCGGGGAAACGGATAAGTATTGTGGCAAGATGTGCCAGTCAGGCCCGTGTACTGGCGGCGGCGGCGGACAAAATCCCAA GACTCCATCGCCGTCTAACTGA
AA sequence Show only first row Show all	>Lus10020253 pacid=23144186 polypeptide=Lus10020253 locus=Lus10020253.g ID=Lus10020253.BGIv1.0 annot-version=v1.0 MEKSATDAAFLSLIVVLFVTTVFSSVANGQDCGEDGHNARCSGDNCCSQSSWCGISDGHCGDGCQAGFGKCSSSGGGSGVPGPDPSISFFELDDGRYSPP EPIMKNLTHEDSYYNTPNCGSQAGGKECEDTKYCCSHFGFCGETDKYCGKMCQSGPCTGGGGGQNPKTPSPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	0	1
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	4.5	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	4.8	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	5.5	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	7.7	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	8.0	1.0000
					Lus10022529 [exp]	8.1	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	8.4	1.0000
					Lus10022894 [exp]	8.7	1.0000
					Lus10002413 [exp]	9.5	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10020253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.