Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08570 297 / 1e-101 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 253 / 5e-84 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT5G61440 214 / 4e-69 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT4G29670 149 / 8e-44 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 141 / 6e-41 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT5G16400 48 / 2e-06 TRXF2, ATF2 thioredoxin F2 (.1) AT3G08710 47 / 2e-06 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT3G02730 46 / 8e-06 TRXF1, ATF1 thioredoxin F-type 1 (.1) AT4G32580 45 / 9e-06 Thioredoxin superfamily protein (.1) AT1G69880 45 / 1e-05 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002640 [exp] 428 / 1e-152 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 321 / 2e-110 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 314 / 1e-107 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10019087 [exp] 216 / 2e-69 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 214 / 1e-68 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10007994 [exp] 161 / 2e-46 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 157 / 7e-45 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10028349 [exp] 52 / 2e-08 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 52 / 2e-08 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061200 [exp] 317 / 8e-109 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.019G031900 [exp] 314 / 1e-107 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.006G150700 [exp] 157 / 5e-47 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.018G066500 [exp] 157 / 8e-47 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.007G018000 [exp] 53 / 8e-09 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.019G054800 [exp] 50 / 3e-07 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.016G138800 [exp] 46 / 4e-06 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.006G110100 [exp] 45 / 7e-06 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.019G062000 [exp] 41 / 0.0003 AT3G08710 164 / 6e-53 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.017G076700 [exp] 40 / 0.0005 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10020254 pacid=23144046 polypeptide=Lus10020254 locus=Lus10020254.g ID=Lus10020254.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTATTGAGCAATCCGAATCCAATCGGATCGTCGTGGTCTGCTGCCGTTTCTTCTTCTTCTTCTTCTTCTTCTCCGGCCAGCAGATGCGATT CCGGCTATCGGAGCTTCCGGATCTGCGTCGTAGGGAAGAGTCGGAGGTCTGCAGCGGTTAGATCACAGGTGGCCACTTGTGGCGGTGGGTTCTATGGTAA ACGGACTGTTGTTCAGGGGAATGAAAGCAGAGGAAGAAGAAGCCATCTTCGTCGATCTTCGATTCGAGCTCAGAGTGGCCGTATAGGAAATGCACAGAGA TGGTGGGAGAAGGGATTACAACCAAACATGAAGGAAGTAACTTCAGCTCAAGACCTTGTTGACTCTCTGTCGAATGCCGGAGACAAACTGGTGATTATCA ATTTCTTCTCCCCGGGATGTGGTGGCTGCAAGGCTCTCCATCCCAAGATATGTCAAATAGCGGAAGCGAACCCGGAAGTACAGTTCCTCCATGTGAACTA CGAGGAGCACAAGTCCATGTGTTACAGCCTCAACGTTCATGTCCTGCCTTTCTTCCGATTCTACCGAGGTTCGCAAGGGCGGTTATGTAGCTTCAGTTGC ACCAATGCCACGATCAAGAAGTTCAGAGATGCATTGGCGAAGCACACTCCGGACAGGTGCAGCCTCGGTCCGGTGAAAGGTCTGGAGGAGAAAGAGCTGG TTGCACTAGCAGCTAACAAAGATCTCAACTTTACAGACACTCAGAAGAAGGTTCTTCCAAAGCCTGCAGTTTCTCTACCACCACCATTGACATCATCTCC CTCCAAGCCGCTTCAGAGTTCTCTCCTCCCGGTCGAAGAGAAAACTCTGGTTTCGTCGGGGAGATGA
AA sequence Show only first row Show all	>Lus10020254 pacid=23144046 polypeptide=Lus10020254 locus=Lus10020254.g ID=Lus10020254.BGIv1.0 annot-version=v1.0 MAELLSNPNPIGSSWSAAVSSSSSSSSPASRCDSGYRSFRICVVGKSRRSAAVRSQVATCGGGFYGKRTVVQGNESRGRRSHLRRSSIRAQSGRIGNAQR WWEKGLQPNMKEVTSAQDLVDSLSNAGDKLVIINFFSPGCGGCKALHPKICQIAEANPEVQFLHVNYEEHKSMCYSLNVHVLPFFRFYRGSQGRLCSFSC TNATIKKFRDALAKHTPDRCSLGPVKGLEEKELVALAANKDLNFTDTQKKVLPKPAVSLPPPLTSSPSKPLQSSLLPVEEKTLVSSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10020254 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	1.7	0.8339
AT3G32930			unknown protein		Lus10039189 [exp]	8.7	0.7720
AT3G58030			RING/U-box superfamily protein...		Lus10029292 [exp]	12.3	0.7431
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	20.3	0.7076
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	27.2	0.7440
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	31.6	0.7167
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10016311 [exp]	37.8	0.6469
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	37.9	0.7097
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	38.3	0.7068
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	39.2	0.6511

Compare expression of checked genes

Lus10020254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.