Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18260 120 / 1e-30 RING/U-box superfamily protein (.1) AT1G14180 89 / 1e-19 RING/U-box superfamily protein (.1.2) AT4G39140 71 / 2e-13 RING/U-box superfamily protein (.1.2.3.4.5) AT1G19680 70 / 7e-13 RING/U-box superfamily protein (.1) AT1G75400 69 / 1e-12 RING/U-box superfamily protein (.1) AT2G21500 60 / 9e-10 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002639 [exp] 727 / 0 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10036764 [exp] 89 / 7e-20 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10017978 [exp] 72 / 2e-13 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 72 / 2e-13 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10037162 [exp] 72 / 3e-13 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008046 [exp] 59 / 1e-09 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002316 [exp] 47 / 2e-05 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032300 [exp] 398 / 5e-137 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 394 / 3e-135 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.005G231500 [exp] 81 / 1e-16 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 80 / 4e-16 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.004G158400 [exp] 77 / 2e-15 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.009G120000 [exp] 75 / 2e-14 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.006G063100 [exp] 71 / 7e-14 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 68 / 7e-13 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 45 / 7e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020256 pacid=23144122 polypeptide=Lus10020256 locus=Lus10020256.g ID=Lus10020256.BGIv1.0 annot-version=v1.0 ATGTGGGATTGCAGATTACACTCGGATGGCGTTTCGCAAGAGCCTCATGGTGTTCGTGGTTCATCTGCTTCGTCGCATAGCAGGAACTGGATGGGTAGTG ATCAGTATACCAACCATCACCATTCTGTCTCTGATGGTGCTTTGTCTTTCTCTGATAGTCCGCCTGATAACATCCCACGGAATCGATGGACATCGCCATT GCCAAAGTTCCATTTAAGCGAGCTTTCTTCTGTCGCCGCAGGAGGCTCTAGAATTCAAACTTCTTGGCTTCCTCGCTCCGCCGAGAGACCATTTCCTGTT AGAGCCAATGTAGCATCCCCTAGCCTGGGTTCTTCGTCTCCTCTTTCCGAATCCGGTCAATGGGAATCGACATCAATAAACAAGCGCCCTTTCCGGAGCT TCAACAACAGGCGATCCTCACACACATCTAAAGCTGTCTATCCTCTAATGTTCCGTAACCCAGTCTCCGACTGCGAAACACTTGGTGGTGATGCTGACTC CAGCAGCTTTGGTCAGGTGACACCATCATCCTCTGGCTGGCCCGATCACAGTCCCAGCATCGAGTACAAATTCCAGAAGACCCTCATGGAACTCCACGAG ACAACGTCACCTGACCCCAGCGCTAGCTCCAGAAGAGACGGCTTTCGATGGAGCAGCGCCAGCAGCTACGATATGGGTCTCGACATAGGGGAGCAGCAGC AGCTCGATTTGGAAAGCCTCAAGTCCAGCAGCAGCACTGCAGTGGATCAAAAGTGCGGAGTCTGCTCGAAACTCCTATGGCAGAAATCTCCCTGGAGCTC GAATCGGATCATGAGAGGAGGCGTCGGAGACATGCCTACCGCTGGGGTCCTACACTGTGCACATGTCTTCCACGCAGAATGCTTGGAACAGGTGACACCG AAGACTCAGGTCCACGACCCTCCTTGTCCGCTGTGCTCGAAAACCATCGGTGGTCTGGAAGGTAGCGAATCTGCAGGTGTTGTTGCTGAACATTTGCTGA GATCCATTCGGAGAAGTAGAGGACCGTTGACTATGTCTGATGATCACCATAACAACACTACTAAAGATATGCTAATAAGGAGGAAGGCTCCGCCATGCCA AGAGGAGAGTAGCTCCTCGTTAACGAGCCGGCTTAAGAAGCATTTCGCCATGAAAGGGAAAACCGGCAAAGTGTTGTTCCATAGGACTGGATCTTCTTCT TCCTGA
AA sequence Show only first row Show all	>Lus10020256 pacid=23144122 polypeptide=Lus10020256 locus=Lus10020256.g ID=Lus10020256.BGIv1.0 annot-version=v1.0 MWDCRLHSDGVSQEPHGVRGSSASSHSRNWMGSDQYTNHHHSVSDGALSFSDSPPDNIPRNRWTSPLPKFHLSELSSVAAGGSRIQTSWLPRSAERPFPV RANVASPSLGSSSPLSESGQWESTSINKRPFRSFNNRRSSHTSKAVYPLMFRNPVSDCETLGGDADSSSFGQVTPSSSGWPDHSPSIEYKFQKTLMELHE TTSPDPSASSRRDGFRWSSASSYDMGLDIGEQQQLDLESLKSSSSTAVDQKCGVCSKLLWQKSPWSSNRIMRGGVGDMPTAGVLHCAHVFHAECLEQVTP KTQVHDPPCPLCSKTIGGLEGSESAGVVAEHLLRSIRRSRGPLTMSDDHHNNTTKDMLIRRKAPPCQEESSSSLTSRLKKHFAMKGKTGKVLFHRTGSSS S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	0	1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	5.0	0.8837
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	6.9	0.8771
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	7.3	0.8662
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	8.5	0.8365
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10032036 [exp]	12.2	0.8329
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	13.3	0.8288
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	14.1	0.8309
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	15.7	0.8026
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	24.8	0.7991
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	25.7	0.8461

Compare expression of checked genes

Lus10020256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.