Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19800 462 / 2e-158 ABCI14, TGD1 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) AT5G56340 234 / 7e-70 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 218 / 2e-64 RING/U-box superfamily protein (.1) AT4G26400 184 / 7e-52 RING/U-box superfamily protein (.1.2) AT3G13430 182 / 2e-51 RING/U-box superfamily protein (.1.2.3) AT3G19950 155 / 8e-42 RING/U-box superfamily protein (.1) AT1G26800 105 / 9e-26 RING/U-box superfamily protein (.1) AT2G40830 107 / 5e-25 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 103 / 8e-24 RING/U-box superfamily protein (.1.2.3) AT5G59550 104 / 1e-23 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002636 [exp] 610 / 0 AT1G19800 473 / 3e-168 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 587 / 0 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10013397 [exp] 184 / 1e-51 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 149 / 4e-40 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10028063 [exp] 109 / 1e-25 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10040783 [exp] 106 / 3e-25 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013235 [exp] 106 / 6e-25 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 104 / 2e-24 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10025612 [exp] 103 / 8e-24 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234400 [exp] 463 / 1e-158 AT1G19800 506 / 0.0 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Potri.013G060500 [exp] 253 / 8e-78 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 248 / 5e-75 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 231 / 2e-68 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 186 / 3e-52 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 146 / 2e-38 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 146 / 2e-38 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 143 / 7e-38 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 143 / 8e-38 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 114 / 1e-28 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF02405 [flax] [poplar] MlaE Permease MlaE
Representative CDS sequence Show only first row Show all	>Lus10020258 pacid=23144037 polypeptide=Lus10020258 locus=Lus10020258.g ID=Lus10020258.BGIv1.0 annot-version=v1.0 ATGGCGGATACAGTGGTGGACCAGTACTGGTGTCACATGTGCGGCCACACAGTGAGCCCAGTAATGGAACCCGAAATCAAATGCCCCATCTGCGAGAGTG GGTTTGTGGAAGAGGTCTCTCCCAACAGCAACCTCACCACCACCATAACCAATTTCGACGGCGAAAACAACAACAACAATAACGAAAATACTAATCCCGA TATCGGCATTAATGGTACTAATGAAAATGGATTCGATGCGGAATCAGAATCGGAACGCGCATTCTCTCTTTGGGCGCCCATCTTTCTAGGGCTAATGGAT GGCTTGGGTGCCTATCGCCCAACTCTGGCTCTCTCTAGCAATGCCATCACCACCAACGAAGCTCAACAAAGTGAGCAACATCAACAACAACTGGATAGGG AGTTTGAGTCACTCCTTAGGAGGAGAAGGACTCGAAGCTCCATTTCGATCCTTCGCTTGCTCCACGACATTCGTGCCAGGGCCGAAACCAACCACCATGG CCAGGAAACTGATGATCATGGTAGTCAAAATCGAGATTCCAGGAATAGCAGGTTGATTCTGGTCGATCCGTTCAACGAAGGTGCATTGATACTCCACGGA CCAACTGAGCCAGCTCGGCCCGAGAGCATTGCTGCTCGATCATTCGCGGACTACCTCGTAGGTCCCGGGCTAGACTTGTTGCTTCAGCATTTGGCTGAGA ATGATCCCAACCGGTATGGCACTCCACCGGCTCAGAAGGAAGCAGTCGACGCAATGCCAACAATTACGGTCGAAGACAACCTCCAATGCGCTGTCTGCCT TGAGGATTTCGAGCTCGGGAGTGAGGCCAAGGAGATGCCTTGTAAGCACAAGTTCCATGAAGGGTGCATCCATCCTTGGCTCGAGCTCCACAGCTCTTGC CCGGTTTGTAGGTTCCAGATTCCTACATCGGATCAAGCTGATGAATCGAAGACAGAGTCGAATGCGAGTGGTGGAGGTGATGGTGATAGTAATAGCAACA ACCCGAGATCGGGCGAAAGATCAAGGCAGCATATGTTTCCATTTCCATTCAACGGTTCGCTTTCGTTCCTGAGGCCACCGAGCGGCATTGGTACTACTTC ATCAGCATCGGGATCGACATCAGATTCTTCGCCCGTTGTGCATCTGTTGGGAGATTCCTCTACTCGTAGTAGTGACGAACCCGGAGGACGAGGACGAGGA CATCATGAAAGGAGTGTTGTGAATCCAATTGGGTATGCGAAAGTTACGAACTTGAATCGAAATCGACTCTTCTTAACTCAGCTTTACAAGCAACAACCCG GTTTTCGAGCTAGAGCGATCGATGGCCGTCCACCGATTTCAATGCTCGAAGAATCAGAAGAAGAAGAATTAGAACAAGACGATGGAAGCTCGATGAATCA CACAATCGACGAGCCACCGTTCTCGAAATGGTCACCTCCAGAGTACATATGGAGGGGGCTATCAGTGTTTGTATTAGCAGGTCAAGTGATCCAACGCACA CTAACTGGTAAAATCCACTGGAGGAACACATTACAGCAGCTCGAAAGAGTTGGGCCGAAATCCGTCGGAGTCTGTCTCTTAACAGCAGCATTCGTCGGGA TGGCGTTCACGATCCAGTTCGTCCGCGAGTTCACGAGACTCGGCTTGAATCGAGCCGTCGGTGGAGTCCTCGCCCTCGCGTTCTCGCGCGAGCTAAGCCC CGTCGTAACCTCGATCGTGGTTGCTGGACGAATGGGGAGCGCCTTCGCCGCCGAATTGGGAACAATGCAGGTCTCCGAGCAGACCGACACACTGAGAGTT CTTGGAGCGAACCCCGTCGACTATCTTGTTACTCCTCGAGTTATCGCTCTGTGTATCGCTCTGCCGTTCTTGACACTGATGTGTTTCACGGTAGGCATGG CGTCCAGCGCCTTGCTGGCGGATAGTGTTTACGGCGTTAGCATTAACATCATAATGGATTCAGCTCACCGAGCACTGAGGTCGTGGGACTTGGTCAGCGC AATGATCAAGTCGGTTTGCTTTGGCGGGATCATATCGACGGTGAGCTGTGCTTGGGGGATTACTACGATAGGCGGCGCAAAGGGTGTGGGTGAGTCGACG ACTTCTGCAGTTGTCATCTCGCTCGTTGGAATCTTCGTTGCCGATTTCCTGCTTTCTTCGCTGTTTTTCCAAGGAGCTGGGGACTCTCTAAAGAAGCTTT AG
AA sequence Show only first row Show all	>Lus10020258 pacid=23144037 polypeptide=Lus10020258 locus=Lus10020258.g ID=Lus10020258.BGIv1.0 annot-version=v1.0 MADTVVDQYWCHMCGHTVSPVMEPEIKCPICESGFVEEVSPNSNLTTTITNFDGENNNNNNENTNPDIGINGTNENGFDAESESERAFSLWAPIFLGLMD GLGAYRPTLALSSNAITTNEAQQSEQHQQQLDREFESLLRRRRTRSSISILRLLHDIRARAETNHHGQETDDHGSQNRDSRNSRLILVDPFNEGALILHG PTEPARPESIAARSFADYLVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDAMPTITVEDNLQCAVCLEDFELGSEAKEMPCKHKFHEGCIHPWLELHSSC PVCRFQIPTSDQADESKTESNASGGGDGDSNSNNPRSGERSRQHMFPFPFNGSLSFLRPPSGIGTTSSASGSTSDSSPVVHLLGDSSTRSSDEPGGRGRG HHERSVVNPIGYAKVTNLNRNRLFLTQLYKQQPGFRARAIDGRPPISMLEESEEEELEQDDGSSMNHTIDEPPFSKWSPPEYIWRGLSVFVLAGQVIQRT LTGKIHWRNTLQQLERVGPKSVGVCLLTAAFVGMAFTIQFVREFTRLGLNRAVGGVLALAFSRELSPVVTSIVVAGRMGSAFAAELGTMQVSEQTDTLRV LGANPVDYLVTPRVIALCIALPFLTLMCFTVGMASSALLADSVYGVSINIIMDSAHRALRSWDLVSAMIKSVCFGGIISTVSCAWGITTIGGAKGVGEST TSAVVISLVGIFVADFLLSSLFFQGAGDSLKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10020258 [exp]	0	1
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	5.8	0.7660
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	8.0	0.7558
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	14.8	0.7349
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	19.3	0.7542
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	20.8	0.6662
AT3G60520			unknown protein		Lus10042880 [exp]	27.7	0.6975
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	31.1	0.7245
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	36.7	0.6808
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	37.0	0.6695
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	39.6	0.7054

Compare expression of checked genes

Lus10020258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.