Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18250 174 / 3e-57 unknown protein AT3G04040 172 / 3e-56 unknown protein AT2G41945 70 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002635 [exp] 239 / 1e-82 AT3G04040 170 / 3e-55 unknown protein Lus10029305 [exp] 89 / 5e-23 AT2G41945 202 / 2e-67 unknown protein Lus10021080 [exp] 89 / 7e-22 AT2G41945 230 / 2e-75 unknown protein Lus10017230 [exp] 75 / 4e-17 AT2G41945 215 / 2e-71 unknown protein Lus10016236 [exp] 42 / 4e-05 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023000 [exp] 198 / 1e-66 AT5G18250 144 / 2e-45 unknown protein Potri.006G195200 [exp] 81 / 6e-20 AT2G41945 200 / 8e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020259 pacid=23144106 polypeptide=Lus10020259 locus=Lus10020259.g ID=Lus10020259.BGIv1.0 annot-version=v1.0 ATGGCGAATTCAAGATCAGAGCTTCTCAGCGACTTACGCTGCCATCACTGCGCCGGCCCTCTAACCAAGCAAGCGGAAACCAGCTGCTGGACAATTCGGC CTCTGCTCAGAGACAGTTTCTCCATGATTGGAACTGCTGTTGGTGGCACAGCTAGCACCTTCTATGGATTTAATCATGTGATGCCGGTAGTTCAGAAGTA CGTAAAAGGACCAATGTGGGTGCATTTCTTCATTGGTGCACCTCCAGTGATAGTGTTCGCCTCAGCTTGCGCAGGATTTGCAGGTGGTGTGCTTCCGGCA GTAGCCCAGCTAACTTCTTCTGGGTACTATGCAGCAGCTTCACCATCGACCTCGCTACATCCTCCTCGAGAAGACAAAGTGCATAGGTCACAGAGCTCTT CAACCTTGTGA
AA sequence Show only first row Show all	>Lus10020259 pacid=23144106 polypeptide=Lus10020259 locus=Lus10020259.g ID=Lus10020259.BGIv1.0 annot-version=v1.0 MANSRSELLSDLRCHHCAGPLTKQAETSCWTIRPLLRDSFSMIGTAVGGTASTFYGFNHVMPVVQKYVKGPMWVHFFIGAPPVIVFASACAGFAGGVLPA VAQLTSSGYYAAASPSTSLHPPREDKVHRSQSSSTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18250			unknown protein		Lus10020259 [exp]	0	1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10027791 [exp]	62.2	0.7270
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025867 [exp]	98.1	0.6758

Compare expression of checked genes

Lus10020259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.