Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55520 380 / 1e-136 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) AT3G13445 378 / 1e-135 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) AT3G13440 40 / 0.0007 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002634 [exp] 424 / 2e-153 AT1G55520 382 / 7e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10031531 [exp] 344 / 3e-122 AT3G13445 333 / 4e-118 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) Lus10017716 [exp] 132 / 7e-39 AT1G55520 125 / 1e-36 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10015150 [exp] 104 / 4e-29 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10033675 [exp] 56 / 2e-10 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059300 [exp] 404 / 6e-146 AT1G55520 380 / 9e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Potri.019G033300 [exp] 403 / 2e-145 AT1G55520 376 / 4e-135 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [flax] [poplar] TBP-like PF00352 [flax] [poplar] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Lus10020260 pacid=23144088 polypeptide=Lus10020260 locus=Lus10020260.g ID=Lus10020260.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGGAGGATTGGAAGGGGCTCAGCCTGTTGATATTTCCAAGCATCCTTCTGGGATTGTTCCGACCTTACAGAATATTGTGTCGACGGTGA ACTTGGATTGCAAGTTGGATCTCAAGCAGATCGCTCTCCAAGCTCGCAATGCGGAGTATAACCCTAAACGTTTTGCTGCTGTTATTATGAGGATCAGGGA CCCTAAAACTACTGCGCTCATTTTCGCATCGGGGAAGATGGTGTGTACGGGTGCTAAAAGTGAGCAACAGTCTAAATTGGCAGCGAGAAAGTATGCTCGA ATCATTCAGAAGCTTGGCTTTCCAGCAAAATTCAAGGACTTCAAGATCCAAAACATAGTCGGCTCATGTGATGTGAAGTTCCCTATTAGGCTAGAAGGTC TCGCTTACTCCCACGGTGCTTTCTCAAGTTACGAGCCCGAGCTGTTCCCGGGGCTGATTTATCGAATGAAACAGCCGAAGATTGTTCTCCTCATTTTCGT CTCTGGCAAGATCGTGATTACAGGAGCTAAGGTCAGAGATGAGACCTATACAGCATTCGAGAACATATATCCTGTGCTTACGGAGTTTCGGAAAGTGCAG CAATGGTATGTTGCTCTTGCTCTTTCTTTCATTCTCTCCTCTTAA
AA sequence Show only first row Show all	>Lus10020260 pacid=23144088 polypeptide=Lus10020260 locus=Lus10020260.g ID=Lus10020260.BGIv1.0 annot-version=v1.0 MAEQGGLEGAQPVDISKHPSGIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR IIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKVQ QWYVALALSFILSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10020260 [exp]	0	1
AT1G10890			unknown protein		Lus10043141 [exp]	12.6	0.8029
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	13.0	0.7670
AT1G12400			Nucleotide excision repair, TF...		Lus10000383 [exp]	13.1	0.7514
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	14.3	0.8104
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	27.5	0.7473
AT4G32960			unknown protein		Lus10007456 [exp]	29.7	0.7979
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	31.6	0.7788
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	35.5	0.7545
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	41.4	0.7721
AT2G45520			unknown protein		Lus10015859 [exp]	43.2	0.7732

Compare expression of checked genes

Lus10020260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.