Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64760 672 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 666 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 613 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 607 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 514 / 2e-180 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 503 / 3e-176 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 484 / 7e-169 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 471 / 2e-163 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 432 / 3e-148 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 425 / 2e-145 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002633 [exp] 910 / 0 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 778 / 0 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 497 / 3e-173 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 489 / 6e-171 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 488 / 1e-170 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005788 [exp] 492 / 2e-164 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 468 / 5e-162 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 467 / 1e-161 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 459 / 1e-158 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032900 [exp] 722 / 0 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 719 / 0 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 526 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 504 / 1e-176 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 489 / 2e-170 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 484 / 7e-169 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 478 / 8e-166 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 472 / 2e-163 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 457 / 6e-158 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 453 / 2e-156 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10020261 pacid=23144092 polypeptide=Lus10020261 locus=Lus10020261.g ID=Lus10020261.BGIv1.0 annot-version=v1.0 ATGGGGAGGATTTCAATTTGGGCGATGGTGTTACTATGGATATTGAGCGCTGTGGATGGATTGGGAGTGAATTGGGGGACTATGGCGTCACACAAGCTGG ATCCGAAGGCTGTGGTGAAGCTTCTGGAAGACAATGGGATTCAGAAGGTGAAGCTGTTTGATGCTGATGCCAACACCATGAATGCTCTTGCTGGGAGCAG TCTGGAAGTTATGGTGGCTATCCCTAATGATCAGCTCCAGTCCATGACTCGCTATGGCAACGCTCAGGATTGGGTCAAGCGGAACATCTCCCGCTATGTC TTCAATGGCGGCGTCAATATCAAGTATGTAGCAGTTGGGAACGAACCATTCCTCAAGACATACAACGGAACATTCGAAAGCATCACATTTCCGGCACTCC AGAACATCCAGAACGCCTTAAACGAGGCGAATTTCGGCAACATCAAAGCCACCGTCCCCTTAAATGCAGACGTCTACTTCTCCCCCGACGACCAGCCTTA CCCCTCAGCCGGAAGGTTCCGGCCAGACATCAACGACCTAATGACCGCGATGGTCCAATTCATGGTCCGGAACAAGGCCCCCTTCACGGTCAACATCTAC CCGTTCCTAAGCCTCTACGGGAACGACGATTTCCCTTTCAACTACGCGTTCTTCGACGGTGTGACTCAGCCGGTAGTGGACCGGGGGTCCGGGATTCAGT ACACGAACGTTTTCGATGCGAATTTTGACACTTTGGTTTCCGCTTTAAAGGCTGCCGGATTCGGAGACATGACTATCATAGTTGGGGAAGTGGGGTGGCC TACTGATGGAGATAAGAATGGTAATATTGGCAATGCTTATAGGTTCTATAACGGGCTTATGCCGCGGCTCGCTGCGAATAAAGGGACTCCTCTTCGACCG GGGTTCATCGAGGTTTACTTGTTCGGCCTTTTAGATGAAGATGCCAAGAGCATTGCTCCCGGGAGCTTTGAGCGGCATTGGGGCATCTTTCGGTACGATG GACAACCTAAGTTTGCGCTTGATCTTTCAGACTCCTCAATTATTTCAGGACAAGGGCAGAACCGGTTTCTTGTGGGCGCGAAAGGAGTGGACTACCTCCC AGCAAAGTGGTGTGTGTTCAATCCAAATGCTAAAGATCTCAGCAAGCTTGCTGATAACATCAACTACGCATGTACCTTCTCCGACTGCACCGCGCTCGGG TATGGATCCTCGTGCAACGGGCTTGATGCCAACGGGAACGCATCGTATGCTTTCAACATGTACTACCAGGTGCAGAACCAGGACGACTTGGCCTGCAATT TCGAAGGCCTAGCCACTGTTACCACGCAGAACATATCTCAGAATAACTGCAATTTCATCATCCAGATCGAGACCGCTTCGGTTCCATCGATGAGAATCGG TCTGGTCTTGTTGGTCGTGTCGTTGTTGGTATCATCACTTGCTTTGGTATAG
AA sequence Show only first row Show all	>Lus10020261 pacid=23144092 polypeptide=Lus10020261 locus=Lus10020261.g ID=Lus10020261.BGIv1.0 annot-version=v1.0 MGRISIWAMVLLWILSAVDGLGVNWGTMASHKLDPKAVVKLLEDNGIQKVKLFDADANTMNALAGSSLEVMVAIPNDQLQSMTRYGNAQDWVKRNISRYV FNGGVNIKYVAVGNEPFLKTYNGTFESITFPALQNIQNALNEANFGNIKATVPLNADVYFSPDDQPYPSAGRFRPDINDLMTAMVQFMVRNKAPFTVNIY PFLSLYGNDDFPFNYAFFDGVTQPVVDRGSGIQYTNVFDANFDTLVSALKAAGFGDMTIIVGEVGWPTDGDKNGNIGNAYRFYNGLMPRLAANKGTPLRP GFIEVYLFGLLDEDAKSIAPGSFERHWGIFRYDGQPKFALDLSDSSIISGQGQNRFLVGAKGVDYLPAKWCVFNPNAKDLSKLADNINYACTFSDCTALG YGSSCNGLDANGNASYAFNMYYQVQNQDDLACNFEGLATVTTQNISQNNCNFIIQIETASVPSMRIGLVLLVVSLLVSSLALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020261 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	4.5	0.8419
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	5.5	0.8525
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	6.5	0.8333
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	7.1	0.8500
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	11.4	0.8341
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	11.6	0.8432
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	17.2	0.8277
					Lus10010435 [exp]	17.3	0.8268
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	18.5	0.8271
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	21.4	0.8275

Compare expression of checked genes

Lus10020261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.