Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18230 506 / 2e-166 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) AT1G07705 45 / 0.0003 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 44 / 0.0007 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002632 [exp] 1487 / 0 AT5G18230 974 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059800 [exp] 1041 / 0 AT5G18230 829 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.019G032800 [exp] 1011 / 0 AT5G18230 846 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04065 [flax] [poplar] Not3 Not1 N-terminal domain, CCR4-Not complex component PF04153 [flax] [poplar] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Lus10020262 pacid=23144179 polypeptide=Lus10020262 locus=Lus10020262.g ID=Lus10020262.BGIv1.0 annot-version=v1.0 ATGGGAGCTAGTCGGAAGCTACAGGGGGAGATCGATCGGGTACTAAAGAAGGTCCAGGAAGGTGTAGACGTCTTCGATAGCATCTGGAACAAGGTTTATG ATACGGACAATGCAAATCAGAAGGAGAAGTTTGAGGCGGACTTGAAAAAAGAGATCAAGAAACTGCAGAGATACAGAGACCAGATCAAGACATGGATTCA GTCAAGTGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCACTGGTGGATGCTCGTAAGCTGATTGAACGTGAAATGGAAAGATTTAAGATA TGCGAGAAGGAAACAAAGACAAAAGCATTCTCAAAAGAAGGGCTTGGTCAACAACCGAAAACTGATCCAAGGGAGAAGGCTAAATCGGAGACAAGAGATT GGTTGAACAACTTGGTTAGCGAATTAGAATCCCAGATTGATAGCTTCGAAGCTGAAATGGAGGGTCTTACCGTGAAGAAAGGGAAGACAAGGCCACCTAG ACTGACACACTTAGAGACATCTATACAACGGCACAAGGCTCATATAATGAAGTTAGAGTTGATCTTGAGGCTACTTGATAACGATGAATTGAGTGCTGAG CAGGTCAATGATGTTAAAGATTTCATCGATGACTATGTGGAGCGTAATCAGGACGATTTTGATGAATTTAGTGATGTTGATGAGCTTTATAGCTCGTTGC CATTAGACAAGGTAGAGTCTCTGGAAGATCTTGTAGCAACTGTTCCTCCTGGTCTTGTCAAGGGTGTACCTGTACATAGTCTGAAGTCTCCCAACGCGGC GTCTGCCGCACCACAATTAAGCACTGCCGGTAGTACTGCGGCCCCTGTCCCAGAGCAACTTGATGATACAGCTTCTCAAGACAGTAATTCTGATGTTGTT CCTAGAACGCCACCTGCAAAAAGCACTATCATTGGTTCTTCTGTTCCATCTACACCATCTGCTAGTCATTCAACTCCCGTGAGTGTTCCTGCCCATCCAT TTGCTGCTGCACCAGCAGCTCCTGTAGCTAGCCCAGGTCCAACTGCTGCTCAAGGGCCTGTAGAAAATGCTGCTGCTATTGCTATCCCTTCGTCTCCTGC CCTTCCTACACATCCTGCAAAGGATGAAGAAACTACAGGAATCCCTGGCCATAGACCATCTTCCTCTCTGGGTGATGCTGGCATAACAAGGGGAATTGGC CGAGGTGGCCTGACTAGCCAGCTCGCAGCTAGTACCCCTCTTACTTCTGGTACAGTTCCTAGCAATGGATCGCTTGGTGCAGTACCTTTAGTCTCTGACA TGACAAAGCGAAACATTTTGGTAACAGATGATAGAATTGGGAATAGCGGAATGGGCCAGTCTTTGAATTCGCCATTAAGTAATCGGATGATCTTGTCTCA AACTGGCAAGGCTAATGATGGTACTGTAGTAGATTCTGGTAATGAAGGTGCTGGGTTAGTTGGCAGAGTCTTTTCTCCTCCTGCGGTTCCTGGTATGCAA TGGAGACCTGGAAGTTCTTTTCAGAATCCAAATGAACCGGGTCAACTTCGTACTCGAACTGAAATAGCCCCTGATCAGAGGGAGAAATTCTTGCAACGTT TTCAGCAAGTCCAACAAGGCCATGGAATTGGCATGCAATCTCTTCCAGGTGGCAGTCATAAGCAGTTCCCGACACAACAAAACCCGCTTCTGCAACAGTA TAACTCTCAAAACTCGTCTCTATCCTCCCAAGCTGCCCTAGGTCTAAGTGCTCAAGCACCAGGGTTCAACAATCCTGCAGCTGCCACCTTGCAGCAGCCA AGCTTAATTCTTCAACAGTCTAGTCAACCAGGTGCGATACCAAGTTCCGTAACCAACAGCGATGCTGGTCATTCGAAAATTGACGAGCAGCAGCAATCGC AGCAATTACCAGATGACTCGGCCTCCGAATCTGGTCCCATGGCCGGACTGGGTATGAGTCTTGCCAGTGAGGATGAGCTCAAAGCTCTTCACACAACAGA CGCTGTCTCAAGCTCAATGGCAGAGCCTGTTCAAGTCCCAAGAGACGCAGATTTCTCACCTGGGCAACCAATACAATCTTCTACGCAGCAATCCAGCGGT TTAGGAGTTATCGGCCGTAGAAGCGTTGCTGACCTTGGTGCCATTGGTGATAATCCCGCTGCAGCTGCTGTAAGTCCCGGTTCGGTGCAGGACAATAGCT ACACTTTGCAGATTCTTGAGGCTGCTTATCACAAACTACCTCAACCCAAAGACTCGGAACGTGCACGGAGCTATATCTCAAGGCATCCGACCGTCACGCC TTCTAGCTTCCCTCAAGTTCAAGCACCCATTGTAAACAGTCCTGGGTTCTGGGAAAGGTTGACCCAAGATAGCTACGGCACCGACACATTGTTCTTCTCG TTCTATTACCAACAGAGCACTTACCAGCAATATCTAGCTGCAAGGGAGCTGAAGAAGGGATCGTGGAGATATCACAGGAAATACAACACGTGGTTCCAAC GACACGAGGAGCCCAAACTCGCCACTGATGAGTTCGAGCAAGGGACGTACGTCTACTTCGATTTCCACATCGCCAACGACGACCACCAACACGGATGGTG TCAGCGAATCAAGACGGAGTTCACTTTCGAGTACAACTATCTTGAAGATGAGCTGATCGTCTAG
AA sequence Show only first row Show all	>Lus10020262 pacid=23144179 polypeptide=Lus10020262 locus=Lus10020262.g ID=Lus10020262.BGIv1.0 annot-version=v1.0 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKI CEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNLVSELESQIDSFEAEMEGLTVKKGKTRPPRLTHLETSIQRHKAHIMKLELILRLLDNDELSAE QVNDVKDFIDDYVERNQDDFDEFSDVDELYSSLPLDKVESLEDLVATVPPGLVKGVPVHSLKSPNAASAAPQLSTAGSTAAPVPEQLDDTASQDSNSDVV PRTPPAKSTIIGSSVPSTPSASHSTPVSVPAHPFAAAPAAPVASPGPTAAQGPVENAAAIAIPSSPALPTHPAKDEETTGIPGHRPSSSLGDAGITRGIG RGGLTSQLAASTPLTSGTVPSNGSLGAVPLVSDMTKRNILVTDDRIGNSGMGQSLNSPLSNRMILSQTGKANDGTVVDSGNEGAGLVGRVFSPPAVPGMQ WRPGSSFQNPNEPGQLRTRTEIAPDQREKFLQRFQQVQQGHGIGMQSLPGGSHKQFPTQQNPLLQQYNSQNSSLSSQAALGLSAQAPGFNNPAAATLQQP SLILQQSSQPGAIPSSVTNSDAGHSKIDEQQQSQQLPDDSASESGPMAGLGMSLASEDELKALHTTDAVSSSMAEPVQVPRDADFSPGQPIQSSTQQSSG LGVIGRRSVADLGAIGDNPAAAAVSPGSVQDNSYTLQILEAAYHKLPQPKDSERARSYISRHPTVTPSSFPQVQAPIVNSPGFWERLTQDSYGTDTLFFS FYYQQSTYQQYLAARELKKGSWRYHRKYNTWFQRHEEPKLATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	2.0	0.9252
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	2.2	0.9289
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	4.6	0.9026
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	4.9	0.9026
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	6.6	0.9124
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	6.9	0.8835
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	8.5	0.9198
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	9.2	0.9045
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	9.4	0.9000
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	9.6	0.8794

Compare expression of checked genes

Lus10020262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.