Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54385 379 / 3e-125 ARM repeat superfamily protein (.1.2) AT3G03970 273 / 1e-84 ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002627 [exp] 961 / 0 AT1G54385 394 / 7e-131 ARM repeat superfamily protein (.1.2) Lus10010672 [exp] 488 / 3e-167 AT1G54385 556 / 0.0 ARM repeat superfamily protein (.1.2) Lus10007428 [exp] 474 / 9e-162 AT1G54385 549 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058700 [exp] 468 / 2e-159 AT1G54385 599 / 0.0 ARM repeat superfamily protein (.1.2) Potri.019G033900 [exp] 460 / 7e-156 AT1G54385 608 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020266 pacid=23144197 polypeptide=Lus10020266 locus=Lus10020266.g ID=Lus10020266.BGIv1.0 annot-version=v1.0 ATGAATGGTAGGAACCGGAGTACGATACTGAATCGAGAACTATCGAATCTGGACAAAGATCTGAAGACTCGAAAATCAGCGATGAAGGCGTTGAAATCGT ATGTCGAAACCATGGATTCCACTTCCATCCCGCTGTTTCTATCTCGAGTTTCGGAGACCAAAGAAACCGGATCGCTATCAGGAGAGTACACAATCTCGCT CTTCGAAGTCCTAGCTCGTGTCCATGGAGTCAAAGCCGCTCCCCACATCGATACCATCATGAAGATCGTAAACAAGACACTGTCTTTAAGTGCAGGATCT TCCCCTCTTCAGCAAGCTTGCTCGAAGGTAGTCCTCGCGTTTGCTCGATATTGCATCGATCCGGGAACTTGCGATAAGGAGAAGAAACGGATAGTCGATT CGATCTTGAGCCCTCTCGTCGAGAGTCTAGTAAGCAATCAGGAATGTCTTAGCTCGGGATCTGCTCTTTGCTTGAAGGCTTTGGTCGAATTGGATAACTG GCGATTCGCTTCTCATTCGATGGTGAACAAAGTCTGCCAAAATGTAGCTGTGGTACTCGAGGAGATCGAGAAGTCCATCAAATCGAACTCGCATATGTCT CTAGTTATGTCTCTTTCGAAACGAGCTCCATCGTTCGTTGAAGCTTATGCCAGGCTGTTTTTAAAAGCTGGAGTTGCCATCCTGAATGCTGGTCGTGTTG TTCAATACCGCGATTCCCAGAAGCGTCTGCTGGCGATTCAGATGGTTGATTTCATGATGAAGTGTTTGGATCGAGAGACGATTTCGCCCTCAATGCTCGA TTCGATCGTTAAGGAGATGGAGAGTTGTCTTTCTGATAAGATGGCGTGGGTGAGAGAGCATGCATTTGAAGCTTTGAAGACTGCAAAGAAAATCTCTGAA GAAGCAGCATCCGAATTCGACAAGAGTTCTGGCTCTGTCAGAGGTCGTAGTAGAAGTCGTACTCGGAGGAGGAATCCATCGAGTCAAGAGTCGCAGACAT TTGACTCGTGCATCATGGAGTATGATTCAATGGTTGAGTCACCTCTATCGGGACCTCCAGCCAATCGCGCAATGTTGAGCAGTGACAATGCGAGAGTGGA TGTATCTCTAAGTGACGGTTTGTTCTCGGAACTTGCTAATGATCATGGAAGTCCCTTTTACAATCCGTTGACCGAAAGCATTGCCCGAGATTACGCAGCA GGGGGGGAGTTTACCGGCTTTACTCCGAGAAGCAACAGAAATGGAATGCCTAGAAGCCGCACTCCCAGTCCTCAGAAGTCACGCTCCAACGTAAATGGCG ATAAATTCGCAACTCCAAAGACTCTCATCAGCTCTCTACAGCACACGGTGGATTCAGAATTTGACGAGAATCGAAGCAGGGGGAGCTTGAGAACTCCATG CTCGTGTAACGACTACTCAAACTGTCAAACTTCTAAGATTGACGAACATGGGTTCGGTGATCATAATGTCGTTGAGTACAATGCGAATGAGAATCGTGAT GTCGCTGAATCAGTTTCTTCAACAGATGATGTTCTTCCTCCTGCTACTGATGCAGAAGAAGTTGCTGCGGAGAAACAGCCCAGGAAGAGTAGTTCTAGAT GGCTCTTCCTCGCCTTTCTTTTCGCTGTCTTGTCAGTATTCGCATCGTTGTTGTTGTTCTTTGATGGCTCTGAACAAGAAGGCCATTATCTTCTTCCAAC TTAG
AA sequence Show only first row Show all	>Lus10020266 pacid=23144197 polypeptide=Lus10020266 locus=Lus10020266.g ID=Lus10020266.BGIv1.0 annot-version=v1.0 MNGRNRSTILNRELSNLDKDLKTRKSAMKALKSYVETMDSTSIPLFLSRVSETKETGSLSGEYTISLFEVLARVHGVKAAPHIDTIMKIVNKTLSLSAGS SPLQQACSKVVLAFARYCIDPGTCDKEKKRIVDSILSPLVESLVSNQECLSSGSALCLKALVELDNWRFASHSMVNKVCQNVAVVLEEIEKSIKSNSHMS LVMSLSKRAPSFVEAYARLFLKAGVAILNAGRVVQYRDSQKRLLAIQMVDFMMKCLDRETISPSMLDSIVKEMESCLSDKMAWVREHAFEALKTAKKISE EAASEFDKSSGSVRGRSRSRTRRRNPSSQESQTFDSCIMEYDSMVESPLSGPPANRAMLSSDNARVDVSLSDGLFSELANDHGSPFYNPLTESIARDYAA GGEFTGFTPRSNRNGMPRSRTPSPQKSRSNVNGDKFATPKTLISSLQHTVDSEFDENRSRGSLRTPCSCNDYSNCQTSKIDEHGFGDHNVVEYNANENRD VAESVSSTDDVLPPATDAEEVAAEKQPRKSSSRWLFLAFLFAVLSVFASLLLFFDGSEQEGHYLLPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54385			ARM repeat superfamily protein...		Lus10020266 [exp]	0	1
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	8.5	0.8949
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	12.6	0.8994
AT2G46980			unknown protein		Lus10038019 [exp]	14.4	0.8969
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	16.2	0.8981
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	23.0	0.8728
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	25.1	0.8835
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	26.5	0.8869
AT1G04650			unknown protein		Lus10011755 [exp]	28.1	0.8812
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	29.0	0.8875
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	29.9	0.8915

Compare expression of checked genes

Lus10020266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.